TF network involved in salinity response

Stable Identifier
R-OSA-9766881
Type
Pathway
Species
Oryza sativa
Compartment
Locations in the PathwayBrowser
Summation

To survive under salt-stress conditions, plants use a variety of mechanisms to mitigate the effect of stress by regulating gene expression. Interestingly, many published studies have shown the transcription factors of the NAC, ERF, and WRKY families play important roles in regulating plants' response to salt stress. Some TFs have a dual role in regulating salinity and drought responses (for example, SNAC1, OsDRAP1, and many others shown in this gene network). Here, we have included representative transcription factors highlighting the various mechanisms involved in salt stress tolerance and salt-stress-induced cell death.

SNAC1-overexpressing transgenic plants show drought resistance and tolerance to high salinity under field conditions (Hu et al., 2006). This observed tolerance is associated with increased stomatal closure and ABA sensitivity in SNAC1 transgenic plants. However, SNAC1-overexpressing transgenic plants do not exhibit a change in root architecture. Thus, drought tolerance mediated by SNAC1 involves preventing water loss by enhancing stomatal closure.

OsNAC3 positively regulates ABA response and salt tolerance (Zhang et al., 2021). Under normal growth conditions, OsNAC3 is predominantly expressed in the leaf sheath and shows the lowest expression in the stem and leaf. However, ABA and NaCl treatment induced OsNAC3 expression in roots. OsNAC3 knockout rice plants show decreased sensitivity to ABA but increased sensitivity to salt stress, while OsNAC3 overexpression showed the opposite effect. Loss of OsNAC3 induces Na+ accumulation in the shoots. OsNAC3 regulates ABA response and salt tolerance genes, such as OsHKT1;4, OsHKT1;5, OsLEA3?1, OsPM-1, OsPP2C68, and OsRAB-21. OsNAC is upregulated in OsDRAP1 overexpression lines, and its promoter has a binding site for OsDRAP1 (Wang et al., 2021).

SALT-RESPONSIVE ERF1 (SERF1) transcription factor is a positive regulator of both short-term and long-term salt and oxidative stress tolerance (Schmidt et al., 2013). SERF1 amplifies the reactive oxygen species-activated MAPK cascade signal during the initial phase of salt stress and it translates the salt-induced signal into an appropriate expressional response, resulting in salt tolerance (Schmidt et al., 2013).

OsDRAP1 (aka ERF48, OsERF48) is a drought-inducible transcriptional activator of the ERF family and acts as a positive regulator of salt tolerance. It is involved in regulating calmodulin-like protein, drought tolerance, and salt tolerance. Overexpression of OsDRAP1 improved drought and salt tolerance in rice by maintaining membrane integrity and enhancing the ROS-scavenging system (Wang et al., 2021).

In contrast, OsNAC2 acts as a negative regulator of salt tolerance. OsNAC2 promotes programmed cell death accompanied by the loss of plasma membrane integrity, nuclear DNA fragmentation, and changes to caspase-like activity (Mao et al., 2018).

Based on the published studies on rice (see a list of publications), we have synthesized this TF-TF gene regulatory network involved in the regulation of salinity response. The specific details, including citations of experimental evidence, are provided in a summary of each reaction.

Literature References
PubMed ID Title Journal Year
22071266 A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth J. Exp. Bot. 2012
16924117 Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice Proc. Natl. Acad. Sci. U.S.A. 2006
22443345 Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution Plant J 2012
19048288 Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice Planta 2009
35522026 Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling Plant Physiol 2022
22685166 DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice Plant Cell 2012
23800963 Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice Plant Cell 2013
18236009 A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance Plant Mol Biol 2008
15276429 Rice proteomics: recent developments and analysis of nuclear proteins Phytochemistry 2004
34800972 A NAC transcription factor OsNAC3 positively regulates ABA response and salt tolerance in rice BMC Plant Biol 2021
28074873 The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice Sci Rep 2017
24253199 New insights into aluminum tolerance in rice: the ASR5 protein binds the STAR1 promoter and other aluminum-responsive genes Mol Plant 2014
25754802 OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice Plant J 2015
23385589 EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice Nat Commun 2013
33664392 Comparative transcriptome and metabolome profiling reveal molecular mechanisms underlying OsDRAP1-mediated salt tolerance in rice Sci Rep 2021
29436050 OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters Plant J 2018
18273684 Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice Plant Mol. Biol. 2008
29588443 GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality Nat Commun 2018
22353606 A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation Plant Methods 2012
17888111 Overexpression of a NAC-domain protein promotes shoot branching in rice New Phytol 2007
20335401 Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions Plant Physiol. 2010
22042334 Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes Genome Biol Evol 2011
32705427 Overexpression of the Transcription Factor Gene OsSTAP1 Increases Salt Tolerance in Rice Rice (N Y) 2020
26476017 Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes Plant Cell Environ. 2016
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