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Secondary metabolism

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compartment	[Compartment:70101] cytosol
created	[InstanceEdit:2744342] D'Eustachio, P, 2012-12-05
dbId	2744344
displayName	Secondary metabolism
eventOf	[TopLevelPathway:R-OSA-2744345] Metabolism and regulation - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:2266397] secondary metabolite biosynthetic process
hasDiagram	true
hasEvent	[Pathway:R-OSA-1119448] 6,7,4'-Trihydroxyisoflavone biosynthesis - Oryza sativa [Pathway:R-OSA-1119455] 9-LOX and 9-HPL pathway - Oryza sativa [Pathway:R-OSA-1119618] 13-LOX and 13-HPL pathway - Oryza sativa [Pathway:R-OSA-1119514] Anthocyanin biosynthesis (delphinidin 3-O-glucoside) - Oryza sativa [Pathway:R-OSA-1119440] Anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside) - Oryza sativa [Pathway:R-OSA-1119350] Calystegine biosynthesis - Oryza sativa [Pathway:R-OSA-1119499] Capsidiol biosynthesis - Oryza sativa [Pathway:R-OSA-1119449] Carotenoid biosynthesis - Oryza sativa [Pathway:R-OSA-1119284] Coumarin biosynthesis (via 2-coumarate) - Oryza sativa [Pathway:R-OSA-1119404] Crocetin biosynthesis - Oryza sativa [Pathway:R-OSA-1119566] Divinyl ether biosynthesis II (13-LOX) - Oryza sativa [Pathway:R-OSA-1119348] Ent-kaurene biosynthesis - Oryza sativa [Pathway:R-OSA-1119531] Flavonoid biosynthesis - Oryza sativa [Pathway:R-OSA-1119341] Galactosylcyclitol biosynthesis - Oryza sativa [Pathway:R-OSA-1119550] Gentiodelphin biosynthesis - Oryza sativa [Pathway:R-OSA-1119545] Geranylgeranyldiphosphate biosynthesis II (plastidic) - Oryza sativa [Pathway:R-OSA-1119344] Hydroxycinnamic acid serotonin amides biosynthesis - Oryza sativa [Pathway:R-OSA-1119569] Kievitone biosynthesis - Oryza sativa [Pathway:R-OSA-1119492] Lactucaxanthin biosynthesis - Oryza sativa [Pathway:R-OSA-1119322] Leucodelphinidin biosynthesis - Oryza sativa [Pathway:R-OSA-1119415] Leucopelargonidin and leucocyanidin biosynthesis - Oryza sativa [Pathway:R-OSA-1119353] Linear furanocoumarin biosynthesis - Oryza sativa [Pathway:R-OSA-9609352] Lycopene catabolism - Oryza sativa [Pathway:R-OSA-1119395] Maackiain biosynthesis - Oryza sativa [Pathway:R-OSA-1119453] Medicarpin biosynthesis - Oryza sativa [Pathway:R-OSA-1119615] Mevalonate pathway - Oryza sativa [Pathway:R-OSA-1119308] Momilactone biosynthesis - Oryza sativa [Pathway:R-OSA-1119274] Monoterpene biosynthesis - Oryza sativa [Pathway:R-OSA-1119378] Myo-inositol biosynthesis - Oryza sativa [Pathway:R-OSA-1119593] Oleoresin monoterpene volatiles biosynthesis - Oryza sativa [Pathway:R-OSA-1119328] Oleoresin sesquiterpene volatiles biosynthesis - Oryza sativa [Pathway:R-OSA-1119371] Oryzalexin A-F biosynthesis - Oryza sativa [Pathway:R-OSA-1119521] Oryzalexin S biosynthesis - Oryza sativa [Pathway:R-OSA-9610720] Oryzalide A biosynthesis - Oryza sativa [Pathway:R-OSA-1119609] Phaseic acid biosynthesis - Oryza sativa [Pathway:R-OSA-1119582] Phenylpropanoid biosynthesis, initial reactions - Oryza sativa [Pathway:R-OSA-1119316] Phenylpropanoid biosynthesis - Oryza sativa [Pathway:R-OSA-9640027] Phytic acid biosynthesis - Oryza sativa [Pathway:R-OSA-1119583] Phytocassane biosynthesis - Oryza sativa [Pathway:R-OSA-1119602] Phytyl-PP biosynthesis - Oryza sativa [Pathway:R-OSA-1119513] Pinobanksin biosynthesis - Oryza sativa [Pathway:R-OSA-1119367] Polyisoprenoid biosynthesis - Oryza sativa [Pathway:R-OSA-1119471] Proanthocyanidin biosynthesis from flavanols - Oryza sativa [Pathway:R-OSA-1119398] Pterocarpan biosynthesis - Oryza sativa [Pathway:R-OSA-1119630] Resveratrol biosynthesis - Oryza sativa [Pathway:R-OSA-1119261] Salicylate biosynthesis - Oryza sativa [Pathway:R-OSA-1119438] Secologanin and strictosidine biosynthesis - Oryza sativa [Pathway:R-OSA-1119370] Sterol biosynthesis - Oryza sativa [Pathway:R-OSA-1119418] Suberin biosynthesis - Oryza sativa [Pathway:R-OSA-9609573] Tricin biosynthesis - Oryza sativa [Pathway:R-OSA-1119386] UDP-N-acetylgalactosamine biosynthesis - Oryza sativa [Pathway:R-OSA-1119472] Wighteone and luteone biosynthesis - Oryza sativa
isInDisease	false
isInferred	false
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Secondary metabolism Secondary metabolite biosynthesis
orthologousEvent	[Pathway:R-PHH-2744344] Secondary metabolism - Panicum hallii var. hallii ("HAL2") [Pathway:R-SIN-2744344] Secondary metabolism - Sesamum indicum [Pathway:R-ZMY-2744344] Secondary metabolism - Zea mays ver5 [Pathway:R-ECU-2744344] Secondary metabolism - Eragrostis curvula [Pathway:R-AUM-2744344] Secondary metabolism - Aegilops umbellulata [Pathway:R-HLH-2744344] Secondary metabolism - Humulus lupulus [Pathway:R-NAT-2744344] Secondary metabolism - Nicotiana attenuata [Pathway:R-PTI-2744344] Secondary metabolism - Populus trichocarpa [Pathway:R-RCH-2744344] Secondary metabolism - Rosa chinensis [Pathway:R-OEU-2744344] Secondary metabolism - Olea europaea [Pathway:R-LPE-2744344] Secondary metabolism - Leersia perrieri [Pathway:R-SSP-2744344] Secondary metabolism - Saccharum spontaneum [Pathway:R-BDI-2744344] Secondary metabolism - Brachypodium distachyon [Pathway:R-STU-2744344] Secondary metabolism - Solanum tuberosum [Pathway:R-OME-2744344] Secondary metabolism - Oryza meridionalis [Pathway:R-PDA-2744344] Secondary metabolism - Phoenix dactylifera [Pathway:R-TDI-2744344] Secondary metabolism - Triticum dicoccoides [Pathway:R-VRA-2744344] Secondary metabolism - Vigna radiata [Pathway:R-MES-2744344] Secondary metabolism - Manihot esculenta [Pathway:R-LSA-2744344] Secondary metabolism - Lactuca sativa [Pathway:R-EGR-2744344] Secondary metabolism - Eucalyptus grandis [Pathway:R-CCN-2744344] Secondary metabolism - Coffea canephora [Pathway:R-OGL-2744344] Secondary metabolism - Oryza glaberrima [Pathway:R-CSA-2744344] Secondary metabolism - Cucumis sativus [Pathway:R-VFA-2744344] Secondary metabolism - Vicia faba var. faba [Pathway:R-VUN-2744344] Secondary metabolism - Vigna unguiculata [Pathway:R-CML-2744344] Secondary metabolism - Cucumis melo [Pathway:R-ORU-2744344] Secondary metabolism - Oryza rufipogon [Pathway:R-AHY-2744344] Secondary metabolism - Arachis hypogaea [Pathway:R-ZJA-2744344] Secondary metabolism - Zoysia japonica [Pathway:R-ACH-2744344] Secondary metabolism - Actinidia chinensis [Pathway:R-OBR-2744344] Secondary metabolism - Oryza brachyantha [Pathway:R-CBA-2744344] Secondary metabolism - Chara braunii [Pathway:R-SCR-2744344] Secondary metabolism - Secale cereale [Pathway:R-PAB-2744344] Secondary metabolism - Picea abies [Pathway:R-CQI-2744344] Secondary metabolism - Chenopodium quinoa [Pathway:R-OES-2744344] Secondary metabolism - Olea europaea var. sylvestris [Pathway:R-OSI-2744344] Secondary metabolism - Oryza sativa Indica Group [Pathway:R-PPE-2744344] Secondary metabolism - Prunus persica [Pathway:R-ADU-2744344] Secondary metabolism - Arachis duranensis [Pathway:R-MGU-2744344] Secondary metabolism - Erythranthe guttata [Pathway:R-GSO-2744344] Secondary metabolism - Glycine soja [Pathway:R-ONI-2744344] Secondary metabolism - Oryza nivara [Pathway:R-JCU-2744344] Secondary metabolism - Jatropha curcas [Pathway:R-LST-2744344] Secondary metabolism - Lathyrus sativus [Pathway:R-DRO-2744344] Secondary metabolism - Dioscorea rotundata [Pathway:R-PED-2744344] Secondary metabolism - Phyllostachys edulis [Pathway:R-CLA-2744344] Secondary metabolism - Citrullus lanatus [Pathway:R-LAN-2744344] Secondary metabolism - Lupinus angustifolius [Pathway:R-DEX-2744344] Secondary metabolism - Digitaria exilis [Pathway:R-AOF-2744344] Secondary metabolism - Asparagus officinalis [Pathway:R-ACO-2744344] Secondary metabolism - Ananas comosus [Pathway:R-AIP-2744344] Secondary metabolism - Arachis ipaensis [Pathway:R-OMI-2744344] Secondary metabolism - Oryza minuta [Pathway:R-OLO-2744344] Secondary metabolism - Oryza longistaminata [Pathway:R-OKA-2744344] Secondary metabolism - Oryza sativa aus subgroup [Pathway:R-SIT-2744344] Secondary metabolism - Setaria italica [Pathway:R-ATR-2744344] Secondary metabolism - Amborella trichopoda [Pathway:R-BRA-2744344] Secondary metabolism - Brassica rapa [Pathway:R-OGR-2744344] Secondary metabolism - Oryza meyeriana var. granulata [Pathway:R-PTA-2744344] Secondary metabolism - Pinus taeda [Pathway:R-CCD-2744344] Secondary metabolism - Cynara cardunculus var. scolymus [Pathway:R-PVU-2744344] Secondary metabolism - Phaseolus vulgaris [Pathway:R-CCL-2744344] Secondary metabolism - Citrus clementina [Pathway:R-OPU-2744344] Secondary metabolism - Oryza punctata [Pathway:R-SVI-2744344] Secondary metabolism - Setaria viridis [Pathway:R-HLP-2744344] Secondary metabolism - Humulus lupulus var. lupulus [Pathway:R-TSP-2744344] Secondary metabolism - Triticum spelta subsp. spelta [Pathway:R-PSA-2744344] Secondary metabolism - Pisum sativum [Pathway:R-AHA-2744344] Secondary metabolism - Arabidopsis halleri [Pathway:R-FEX-2744344] Secondary metabolism - Fraxinus excelsior (European ash) [Pathway:R-CCR-2744344] Secondary metabolism - Chondrus crispus [Pathway:R-NNU-2744344] Secondary metabolism - Nelumbo nucifera [Pathway:R-OAU-2744344] Secondary metabolism - Oryza australiensis [Pathway:R-ATA-2744344] Secondary metabolism - Aegilops tauschii [Pathway:R-CCP-2744344] Secondary metabolism - Corchorus capsularis [Pathway:R-HAN-2744344] Secondary metabolism - Helianthus annuus [Pathway:R-PSO-2744344] Secondary metabolism - Papaver somniferum [Pathway:R-BVU-2744344] Secondary metabolism - Beta vulgaris [Pathway:R-TCA-2744344] Secondary metabolism - Theobroma cacao [Pathway:R-GRA-2744344] Secondary metabolism - Gossypium raimondii [Pathway:R-QSU-2744344] Secondary metabolism - Quercus suber [Pathway:R-OBA-2744344] Secondary metabolism - Oryza barthii [Pathway:R-ITR-2744344] Secondary metabolism - Ipomoea triloba [Pathway:R-CAR-2744344] Secondary metabolism - Cicer arietinum [Pathway:R-MPO-2744344] Secondary metabolism - Marchantia polymorpha [Pathway:R-SLY-2744344] Secondary metabolism - Solanum lycopersicum [Pathway:R-QLO-2744344] Secondary metabolism - Quercus lobata [Pathway:R-JRE-2744344] Secondary metabolism - Juglans regia [Pathway:R-BOL-2744344] Secondary metabolism - Brassica oleracea [Pathway:R-ECG-2744344] Secondary metabolism - Echinochloa crus-galli [Pathway:R-CSI-2744344] Secondary metabolism - Citrus sinensis [Pathway:R-VAN-2744344] Secondary metabolism - Vigna angularis [Pathway:R-TTU-2744344] Secondary metabolism - Triticum turgidum [Pathway:R-ASA-2744344] Secondary metabolism - Avena sativa [Pathway:R-CAN-2744344] Secondary metabolism - Capsicum annuum [Pathway:R-CME-2744344] Secondary metabolism - Cyanidioschyzon merolae [Pathway:R-CSC-2744344] Secondary metabolism - Cannabis sativa [Pathway:R-MDO-2744344] Secondary metabolism - Malus domestica [Pathway:R-PPA-2744344] Secondary metabolism - Physcomitrella patens [Pathway:R-TAE-2744344] Secondary metabolism - Triticum aestivum [Pathway:R-CCI-2744344] Secondary metabolism - Corymbia citriodora [Pathway:R-ETE-2744344] Secondary metabolism - Eragrostis tef [Pathway:R-OGU-2744344] Secondary metabolism - Oryza glumaepatula [Pathway:R-SHI-2744344] Secondary metabolism - Salvia hispanica [Pathway:R-PAV-2744344] Secondary metabolism - Prunus avium [Pathway:R-PHA-2744344] Secondary metabolism - Panicum hallii ("FIL2") [Pathway:R-BJU-2744344] Secondary metabolism - Brassica juncea [Pathway:R-CCA-2744344] Secondary metabolism - Cajanus cajan [Pathway:R-SBI-2744344] Secondary metabolism - Sorghum bicolor [Pathway:R-ATH-2744344] Secondary metabolism - Arabidopsis thaliana [Pathway:R-FCR-2744344] Secondary metabolism - Ficus carica [Pathway:R-OLU-2744344] Secondary metabolism - Ostreococcus lucimarinus [Pathway:R-NCO-2744344] Secondary metabolism - Nymphaea colorata [Pathway:R-SPC-2744344] Secondary metabolism - Synechocystis sp. PCC 6803 [Pathway:R-MAC-2744344] Secondary metabolism - Musa acuminata [Pathway:R-DCA-2744344] Secondary metabolism - Daucus carota [Pathway:R-OOF-2744344] Secondary metabolism - Oryza officinalis [Pathway:R-TUR-2744344] Secondary metabolism - Triticum urartu [Pathway:R-CRU-2744344] Secondary metabolism - Capsella rubella [Pathway:R-TPR-2744344] Secondary metabolism - Trifolium pratense [Pathway:R-BNA-2744344] Secondary metabolism - Brassica napus [Pathway:R-SMO-2744344] Secondary metabolism - Selaginella moellendorffii [Pathway:R-CSK-2744344] Secondary metabolism - Cannabis sativa subsp. indica [Pathway:R-COL-2744344] Secondary metabolism - Corchorus olitorius [Pathway:R-LPR-2744344] Secondary metabolism - Lolium perenne [Pathway:R-ALY-2744344] Secondary metabolism - Arabidopsis lyrata [Pathway:R-GMA-2744344] Secondary metabolism - Glycine max [Pathway:R-HVU-2744344] Secondary metabolism - Hordeum vulgare [Pathway:R-ZMA-2744344] Secondary metabolism - Zea mays [Pathway:R-MTR-2744344] Secondary metabolism - Medicago truncatula [Pathway:R-FVE-2744344] Secondary metabolism - Fragaria vesca [Pathway:R-GSU-2744344] Secondary metabolism - Galdieria sulphuraria [Pathway:R-CRE-2744344] Secondary metabolism - Chlamydomonas reinhardtii [Pathway:R-VVN-2744344] Secondary metabolism - Vitis vinifera [Pathway:R-PVE-2744344] Secondary metabolism - Pistacia vera [Pathway:R-TTI-2744344] Secondary metabolism - Triticum timopheevii subsp. timopheevii [Pathway:R-CST-2744344] Secondary metabolism - Camelina sativa
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-2744344

Referrals

(hasEvent)

[TopLevelPathway:R-OSA-2744345] Metabolism and regulation - Oryza sativa

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