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Flavonoid biosynthesis

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compartment	[Compartment:70101] cytosol
created	[InstanceEdit:1164949] Wu, Guanming, 2010-12-11
crossReference	[DatabaseIdentifier:1142245] RiceCyc:PWY1F-FLAVSYN
dbId	1119531
displayName	Flavonoid biosynthesis
edited	[InstanceEdit:2878078] Amarasinghe, V, 2012-02-29
eventOf	[Pathway:R-OSA-2744344] Secondary metabolism - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:4112] flavonoid biosynthetic process
hasDiagram	true
hasEvent	[Reaction:R-OSA-1121022] 4-coumarate--CoA ligase - Oryza sativa [Reaction:R-OSA-1120784] Naringenin-chalcone synthase - Oryza sativa [Reaction:R-OSA-1120799] Chalcone isomerase - Oryza sativa [Reaction:R-OSA-1120317] Naringenin 3-dioxygenase - Oryza sativa [Reaction:R-OSA-1119714] 4-coumaroyl-CoA+coumaroyl-CoA+malonyl-CoA+NADPH->isoliquiritigenin+coenzyme A+CO2+NADP++H2O - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:1154582] Colour genes (R and Rc) for grain and coleoptile upregulate flavonoid biosynthesis genes in wheat [LiteratureReference:1154545] Functional conservation of plant secondary metabolic enzymes revealed by complementation of Arabidopsis flavonoid mutants with maize genes
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Flavonoid biosynthesis pathway100062
orthologousEvent	[Pathway:R-VUN-1119531] Flavonoid biosynthesis - Vigna unguiculata [Pathway:R-PAV-1119531] Flavonoid biosynthesis - Prunus avium [Pathway:R-MPO-1119531] Flavonoid biosynthesis - Marchantia polymorpha [Pathway:R-PDA-1119531] Flavonoid biosynthesis - Phoenix dactylifera [Pathway:R-TDI-1119531] Flavonoid biosynthesis - Triticum dicoccoides [Pathway:R-ASA-1119531] Flavonoid biosynthesis - Avena sativa [Pathway:R-VAN-1119531] Flavonoid biosynthesis - Vigna angularis [Pathway:R-ITR-1119531] Flavonoid biosynthesis - Ipomoea triloba [Pathway:R-HLP-1119531] Flavonoid biosynthesis - Humulus lupulus var. lupulus [Pathway:R-MES-1119531] Flavonoid biosynthesis - Manihot esculenta [Pathway:R-BDI-1119531] Flavonoid biosynthesis - Brachypodium distachyon [Pathway:R-AIP-1119531] Flavonoid biosynthesis - Arachis ipaensis [Pathway:R-VRA-1119531] Flavonoid biosynthesis - Vigna radiata [Pathway:R-PPE-1119531] Flavonoid biosynthesis - Prunus persica [Pathway:R-OMI-1119531] Flavonoid biosynthesis - Oryza minuta [Pathway:R-LPE-1119531] Flavonoid biosynthesis - Leersia perrieri [Pathway:R-ATH-1119531] Flavonoid biosynthesis - Arabidopsis thaliana [Pathway:R-TTI-1119531] Flavonoid biosynthesis - Triticum timopheevii subsp. timopheevii [Pathway:R-OGR-1119531] Flavonoid biosynthesis - Oryza meyeriana var. granulata [Pathway:R-OBA-1119531] Flavonoid biosynthesis - Oryza barthii [Pathway:R-PVE-1119531] Flavonoid biosynthesis - Pistacia vera [Pathway:R-PVU-1119531] Flavonoid biosynthesis - Phaseolus vulgaris [Pathway:R-GMA-1119531] Flavonoid biosynthesis - Glycine max [Pathway:R-SIT-1119531] Flavonoid biosynthesis - Setaria italica [Pathway:R-SSP-1119531] Flavonoid biosynthesis - Saccharum spontaneum [Pathway:R-ZMA-1119531] Flavonoid biosynthesis - Zea mays [Pathway:R-TCA-1119531] Flavonoid biosynthesis - Theobroma cacao [Pathway:R-CQI-1119531] Flavonoid biosynthesis - Chenopodium quinoa [Pathway:R-LST-1119531] Flavonoid biosynthesis - Lathyrus sativus [Pathway:R-JCU-1119531] Flavonoid biosynthesis - Jatropha curcas [Pathway:R-CCP-1119531] Flavonoid biosynthesis - Corchorus capsularis [Pathway:R-CCA-1119531] Flavonoid biosynthesis - Cajanus cajan [Pathway:R-MAC-1119531] Flavonoid biosynthesis - Musa acuminata [Pathway:R-ADU-1119531] Flavonoid biosynthesis - Arachis duranensis [Pathway:R-OLO-1119531] Flavonoid biosynthesis - Oryza longistaminata [Pathway:R-QLO-1119531] Flavonoid biosynthesis - Quercus lobata [Pathway:R-AHY-1119531] Flavonoid biosynthesis - Arachis hypogaea [Pathway:R-SVI-1119531] Flavonoid biosynthesis - Setaria viridis [Pathway:R-NCO-1119531] Flavonoid biosynthesis - Nymphaea colorata [Pathway:R-LSA-1119531] Flavonoid biosynthesis - Lactuca sativa [Pathway:R-ALY-1119531] Flavonoid biosynthesis - Arabidopsis lyrata [Pathway:R-CLA-1119531] Flavonoid biosynthesis - Citrullus lanatus [Pathway:R-AHA-1119531] Flavonoid biosynthesis - Arabidopsis halleri [Pathway:R-OGL-1119531] Flavonoid biosynthesis - Oryza glaberrima [Pathway:R-RCH-1119531] Flavonoid biosynthesis - Rosa chinensis [Pathway:R-MTR-1119531] Flavonoid biosynthesis - Medicago truncatula [Pathway:R-TUR-1119531] Flavonoid biosynthesis - Triticum urartu [Pathway:R-SHI-1119531] Flavonoid biosynthesis - Salvia hispanica [Pathway:R-ZJA-1119531] Flavonoid biosynthesis - Zoysia japonica [Pathway:R-SIN-1119531] Flavonoid biosynthesis - Sesamum indicum [Pathway:R-ACH-1119531] Flavonoid biosynthesis - Actinidia chinensis [Pathway:R-BRA-1119531] Flavonoid biosynthesis - Brassica rapa [Pathway:R-PPA-1119531] Flavonoid biosynthesis - Physcomitrella patens [Pathway:R-PSO-1119531] Flavonoid biosynthesis - Papaver somniferum [Pathway:R-ATA-1119531] Flavonoid biosynthesis - Aegilops tauschii [Pathway:R-ZMY-1119531] Flavonoid biosynthesis - Zea mays ver5 [Pathway:R-ECU-1119531] Flavonoid biosynthesis - Eragrostis curvula [Pathway:R-OBR-1119531] Flavonoid biosynthesis - Oryza brachyantha [Pathway:R-OKA-1119531] Flavonoid biosynthesis - Oryza sativa aus subgroup [Pathway:R-VFA-1119531] Flavonoid biosynthesis - Vicia faba var. faba [Pathway:R-HLH-1119531] Flavonoid biosynthesis - Humulus lupulus [Pathway:R-EGR-1119531] Flavonoid biosynthesis - Eucalyptus grandis [Pathway:R-JRE-1119531] Flavonoid biosynthesis - Juglans regia [Pathway:R-SMO-1119531] Flavonoid biosynthesis - Selaginella moellendorffii [Pathway:R-MDO-1119531] Flavonoid biosynthesis - Malus domestica [Pathway:R-OAU-1119531] Flavonoid biosynthesis - Oryza australiensis [Pathway:R-ECG-1119531] Flavonoid biosynthesis - Echinochloa crus-galli [Pathway:R-ATR-1119531] Flavonoid biosynthesis - Amborella trichopoda [Pathway:R-OME-1119531] Flavonoid biosynthesis - Oryza meridionalis [Pathway:R-CCI-1119531] Flavonoid biosynthesis - Corymbia citriodora [Pathway:R-PHA-1119531] Flavonoid biosynthesis - Panicum hallii ("FIL2") [Pathway:R-HAN-1119531] Flavonoid biosynthesis - Helianthus annuus [Pathway:R-CAR-1119531] Flavonoid biosynthesis - Cicer arietinum [Pathway:R-DRO-1119531] Flavonoid biosynthesis - Dioscorea rotundata [Pathway:R-PTA-1119531] Flavonoid biosynthesis - Pinus taeda [Pathway:R-LPR-1119531] Flavonoid biosynthesis - Lolium perenne [Pathway:R-CSC-1119531] Flavonoid biosynthesis - Cannabis sativa [Pathway:R-CST-1119531] Flavonoid biosynthesis - Camelina sativa [Pathway:R-CCL-1119531] Flavonoid biosynthesis - Citrus clementina [Pathway:R-OEU-1119531] Flavonoid biosynthesis - Olea europaea [Pathway:R-SLY-1119531] Flavonoid biosynthesis - Solanum lycopersicum [Pathway:R-VVN-1119531] Flavonoid biosynthesis - Vitis vinifera [Pathway:R-PHH-1119531] Flavonoid biosynthesis - Panicum hallii var. hallii ("HAL2") [Pathway:R-CRU-1119531] Flavonoid biosynthesis - Capsella rubella [Pathway:R-TTU-1119531] Flavonoid biosynthesis - Triticum turgidum [Pathway:R-CCD-1119531] Flavonoid biosynthesis - Cynara cardunculus var. scolymus [Pathway:R-HVU-1119531] Flavonoid biosynthesis - Hordeum vulgare [Pathway:R-OPU-1119531] Flavonoid biosynthesis - Oryza punctata [Pathway:R-FEX-1119531] Flavonoid biosynthesis - Fraxinus excelsior (European ash) [Pathway:R-ONI-1119531] Flavonoid biosynthesis - Oryza nivara [Pathway:R-GSO-1119531] Flavonoid biosynthesis - Glycine soja [Pathway:R-PAB-1119531] Flavonoid biosynthesis - Picea abies [Pathway:R-SBI-1119531] Flavonoid biosynthesis - Sorghum bicolor [Pathway:R-OSI-1119531] Flavonoid biosynthesis - Oryza sativa Indica Group [Pathway:R-ETE-1119531] Flavonoid biosynthesis - Eragrostis tef [Pathway:R-CSK-1119531] Flavonoid biosynthesis - Cannabis sativa subsp. indica [Pathway:R-NNU-1119531] Flavonoid biosynthesis - Nelumbo nucifera [Pathway:R-CAN-1119531] Flavonoid biosynthesis - Capsicum annuum [Pathway:R-GRA-1119531] Flavonoid biosynthesis - Gossypium raimondii [Pathway:R-AOF-1119531] Flavonoid biosynthesis - Asparagus officinalis [Pathway:R-BOL-1119531] Flavonoid biosynthesis - Brassica oleracea [Pathway:R-TPR-1119531] Flavonoid biosynthesis - Trifolium pratense [Pathway:R-DEX-1119531] Flavonoid biosynthesis - Digitaria exilis [Pathway:R-SCR-1119531] Flavonoid biosynthesis - Secale cereale [Pathway:R-CCN-1119531] Flavonoid biosynthesis - Coffea canephora [Pathway:R-FVE-1119531] Flavonoid biosynthesis - Fragaria vesca [Pathway:R-TAE-1119531] Flavonoid biosynthesis - Triticum aestivum [Pathway:R-DCA-1119531] Flavonoid biosynthesis - Daucus carota [Pathway:R-CSA-1119531] Flavonoid biosynthesis - Cucumis sativus [Pathway:R-TSP-1119531] Flavonoid biosynthesis - Triticum spelta subsp. spelta [Pathway:R-PSA-1119531] Flavonoid biosynthesis - Pisum sativum [Pathway:R-ACO-1119531] Flavonoid biosynthesis - Ananas comosus [Pathway:R-COL-1119531] Flavonoid biosynthesis - Corchorus olitorius [Pathway:R-OGU-1119531] Flavonoid biosynthesis - Oryza glumaepatula [Pathway:R-AUM-1119531] Flavonoid biosynthesis - Aegilops umbellulata [Pathway:R-OES-1119531] Flavonoid biosynthesis - Olea europaea var. sylvestris [Pathway:R-MGU-1119531] Flavonoid biosynthesis - Erythranthe guttata [Pathway:R-NAT-1119531] Flavonoid biosynthesis - Nicotiana attenuata [Pathway:R-BVU-1119531] Flavonoid biosynthesis - Beta vulgaris [Pathway:R-FCR-1119531] Flavonoid biosynthesis - Ficus carica [Pathway:R-PTI-1119531] Flavonoid biosynthesis - Populus trichocarpa [Pathway:R-PED-1119531] Flavonoid biosynthesis - Phyllostachys edulis [Pathway:R-QSU-1119531] Flavonoid biosynthesis - Quercus suber [Pathway:R-STU-1119531] Flavonoid biosynthesis - Solanum tuberosum [Pathway:R-LAN-1119531] Flavonoid biosynthesis - Lupinus angustifolius [Pathway:R-OOF-1119531] Flavonoid biosynthesis - Oryza officinalis [Pathway:R-ORU-1119531] Flavonoid biosynthesis - Oryza rufipogon [Pathway:R-BNA-1119531] Flavonoid biosynthesis - Brassica napus [Pathway:R-CSI-1119531] Flavonoid biosynthesis - Citrus sinensis [Pathway:R-BJU-1119531] Flavonoid biosynthesis - Brassica juncea [Pathway:R-CML-1119531] Flavonoid biosynthesis - Cucumis melo
revised	[InstanceEdit:2878078] Amarasinghe, V, 2012-02-29
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-1119531
summation	[Summation:2878083] flavonoid biosynthesis: Flavonoids are secondary metabolites... [Summation:2850146] Developed by Gramene.org

Referrals

(hasEvent)

[Pathway:R-OSA-2744344] Secondary metabolism - Oryza sativa