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Phenylpropanoid biosynthesis

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created	[InstanceEdit:1164949] Wu, Guanming, 2010-12-11
crossReference	[DatabaseIdentifier:1146415] RiceCyc:PWY-361
dbId	1119316
displayName	Phenylpropanoid biosynthesis
edited	[InstanceEdit:2958712] Beorchia, Dylan, 2012-12-31 [InstanceEdit:2958715] Dharmawardhana, DP, 2012-12-31
eventOf	[Pathway:R-OSA-2744344] Secondary metabolism - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:3375] phenylpropanoid biosynthetic process
hasDiagram	true
hasEvent	[Reaction:R-OSA-1121022] 4-coumarate--CoA ligase - Oryza sativa [Reaction:R-OSA-1120189] 4-coumaroyl-CoA+coumaroyl-CoA+NADPH->coumaraldehyde+NADP++coenzyme A - Oryza sativa [Reaction:R-OSA-1120504] 4-coumaroylshikimate+NADPH+O2->caffeoylshikimate+NADP++H2O - Oryza sativa [Reaction:R-OSA-1119735] caffeoylshikimate+coenzyme A->caffeoyl-CoA+shikimate - Oryza sativa [Reaction:R-OSA-1120226] 4-coumaroylquinate+NADPH+O2->caffeoylquinate+NADP++H2O - Oryza sativa [Reaction:R-OSA-1120091] caffeoylquinate+coenzyme A->caffeoyl-CoA+quinate - Oryza sativa [Reaction:R-OSA-1121498] caffeoyl-CoA+ S-adenosyl-L-methionine-> feruloyl-CoA + S-adenosyl-L-homocysteine - Oryza sativa [Reaction:R-OSA-1121028] feruloyl-CoA+NADPH->coniferyl aldehyde+NADP++coenzyme A - Oryza sativa [Reaction:R-OSA-1121401] coumaraldehyde+NADPH->coumaryl-alcohol+NADP+ - Oryza sativa [Reaction:R-OSA-1120112] coniferyl aldehyde+NADPH+O2->5-hydroxy-coniferaldehyde+NADP++H2O - Oryza sativa [Reaction:R-OSA-1121200] 5-hydroxy-coniferaldehyde+S-adenosyl-L-methionine->S-adenosyl-L-homocysteine+sinapaldehyde - Oryza sativa [Reaction:R-OSA-1120627] sinapaldehyde+NADPH->sinapyl-alcohol+NADP+ - Oryza sativa [Reaction:R-OSA-1121060] 4-coumaroyl-CoA+shikimate+coumaroyl-CoA->4-coumaroylshikimate+coenzyme A - Oryza sativa [Reaction:R-OSA-1120772] 4-coumaroyl-CoA+quinate+coumaroyl-CoA->4-coumaroylquinate+coenzyme A - Oryza sativa [Reaction:R-OSA-1121626] coniferyl aldehyde+NADPH->coniferyl alcohol+NADP+ - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:1154533] GOLD HULL AND INTERNODE2 encodes a primarily multifunctional cinnamyl-alcohol dehydrogenase in rice [LiteratureReference:1154561] Structure of the cinnamyl-alcohol dehydrogenase gene family in rice and promoter activity of a member associated with lignification [LiteratureReference:1154573] FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice [LiteratureReference:1154574] Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice [LiteratureReference:1154568] Nucleotide sequence of rice 4-coumarate:CoA ligase gene, 4-CL.1 [LiteratureReference:1154572] Genome-wide analysis of a land plant-specific acyl:coenzyme A synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Phenylpropanoid biosynthesis Monolignol biosynthesis Lignin biosynthesis pathway101522
orthologousEvent	[Pathway:R-QLO-1119316] Phenylpropanoid biosynthesis - Quercus lobata [Pathway:R-ATH-1119316] Phenylpropanoid biosynthesis - Arabidopsis thaliana [Pathway:R-TAE-1119316] Phenylpropanoid biosynthesis - Triticum aestivum [Pathway:R-DRO-1119316] Phenylpropanoid biosynthesis - Dioscorea rotundata [Pathway:R-AOF-1119316] Phenylpropanoid biosynthesis - Asparagus officinalis [Pathway:R-MDO-1119316] Phenylpropanoid biosynthesis - Malus domestica [Pathway:R-OOF-1119316] Phenylpropanoid biosynthesis - Oryza officinalis [Pathway:R-CSC-1119316] Phenylpropanoid biosynthesis - Cannabis sativa [Pathway:R-LST-1119316] Phenylpropanoid biosynthesis - Lathyrus sativus [Pathway:R-CCI-1119316] Phenylpropanoid biosynthesis - Corymbia citriodora [Pathway:R-CQI-1119316] Phenylpropanoid biosynthesis - Chenopodium quinoa [Pathway:R-NAT-1119316] Phenylpropanoid biosynthesis - Nicotiana attenuata [Pathway:R-FEX-1119316] Phenylpropanoid biosynthesis - Fraxinus excelsior (European ash) [Pathway:R-PTI-1119316] Phenylpropanoid biosynthesis - Populus trichocarpa [Pathway:R-JRE-1119316] Phenylpropanoid biosynthesis - Juglans regia [Pathway:R-OBR-1119316] Phenylpropanoid biosynthesis - Oryza brachyantha [Pathway:R-CSA-1119316] Phenylpropanoid biosynthesis - Cucumis sativus [Pathway:R-VRA-1119316] Phenylpropanoid biosynthesis - Vigna radiata [Pathway:R-PHH-1119316] Phenylpropanoid biosynthesis - Panicum hallii var. hallii ("HAL2") [Pathway:R-OKA-1119316] Phenylpropanoid biosynthesis - Oryza sativa aus subgroup [Pathway:R-CCN-1119316] Phenylpropanoid biosynthesis - Coffea canephora [Pathway:R-RCH-1119316] Phenylpropanoid biosynthesis - Rosa chinensis [Pathway:R-ALY-1119316] Phenylpropanoid biosynthesis - Arabidopsis lyrata [Pathway:R-PDA-1119316] Phenylpropanoid biosynthesis - Phoenix dactylifera [Pathway:R-OAU-1119316] Phenylpropanoid biosynthesis - Oryza australiensis [Pathway:R-VAN-1119316] Phenylpropanoid biosynthesis - Vigna angularis [Pathway:R-MPO-1119316] Phenylpropanoid biosynthesis - Marchantia polymorpha [Pathway:R-HLH-1119316] Phenylpropanoid biosynthesis - Humulus lupulus [Pathway:R-MES-1119316] Phenylpropanoid biosynthesis - Manihot esculenta [Pathway:R-ASA-1119316] Phenylpropanoid biosynthesis - Avena sativa [Pathway:R-ITR-1119316] Phenylpropanoid biosynthesis - Ipomoea triloba [Pathway:R-LPR-1119316] Phenylpropanoid biosynthesis - Lolium perenne [Pathway:R-LPE-1119316] Phenylpropanoid biosynthesis - Leersia perrieri [Pathway:R-EGR-1119316] Phenylpropanoid biosynthesis - Eucalyptus grandis [Pathway:R-NNU-1119316] Phenylpropanoid biosynthesis - Nelumbo nucifera [Pathway:R-ECU-1119316] Phenylpropanoid biosynthesis - Eragrostis curvula [Pathway:R-CCL-1119316] Phenylpropanoid biosynthesis - Citrus clementina [Pathway:R-VFA-1119316] Phenylpropanoid biosynthesis - Vicia faba var. faba [Pathway:R-GRA-1119316] Phenylpropanoid biosynthesis - Gossypium raimondii [Pathway:R-ZMY-1119316] Phenylpropanoid biosynthesis - Zea mays ver5 [Pathway:R-NCO-1119316] Phenylpropanoid biosynthesis - Nymphaea colorata [Pathway:R-PHA-1119316] Phenylpropanoid biosynthesis - Panicum hallii ("FIL2") [Pathway:R-STU-1119316] Phenylpropanoid biosynthesis - Solanum tuberosum [Pathway:R-TDI-1119316] Phenylpropanoid biosynthesis - Triticum dicoccoides [Pathway:R-HAN-1119316] Phenylpropanoid biosynthesis - Helianthus annuus [Pathway:R-MAC-1119316] Phenylpropanoid biosynthesis - Musa acuminata [Pathway:R-TPR-1119316] Phenylpropanoid biosynthesis - Trifolium pratense [Pathway:R-OME-1119316] Phenylpropanoid biosynthesis - Oryza meridionalis [Pathway:R-ATA-1119316] Phenylpropanoid biosynthesis - Aegilops tauschii [Pathway:R-ADU-1119316] Phenylpropanoid biosynthesis - Arachis duranensis [Pathway:R-CCA-1119316] Phenylpropanoid biosynthesis - Cajanus cajan [Pathway:R-PSO-1119316] Phenylpropanoid biosynthesis - Papaver somniferum [Pathway:R-GMA-1119316] Phenylpropanoid biosynthesis - Glycine max [Pathway:R-BVU-1119316] Phenylpropanoid biosynthesis - Beta vulgaris [Pathway:R-JCU-1119316] Phenylpropanoid biosynthesis - Jatropha curcas [Pathway:R-ONI-1119316] Phenylpropanoid biosynthesis - Oryza nivara [Pathway:R-SIT-1119316] Phenylpropanoid biosynthesis - Setaria italica [Pathway:R-BRA-1119316] Phenylpropanoid biosynthesis - Brassica rapa [Pathway:R-ATR-1119316] Phenylpropanoid biosynthesis - Amborella trichopoda [Pathway:R-VVN-1119316] Phenylpropanoid biosynthesis - Vitis vinifera [Pathway:R-CRU-1119316] Phenylpropanoid biosynthesis - Capsella rubella [Pathway:R-OMI-1119316] Phenylpropanoid biosynthesis - Oryza minuta [Pathway:R-PSA-1119316] Phenylpropanoid biosynthesis - Pisum sativum [Pathway:R-TUR-1119316] Phenylpropanoid biosynthesis - Triticum urartu [Pathway:R-TTI-1119316] Phenylpropanoid biosynthesis - Triticum timopheevii subsp. timopheevii [Pathway:R-SVI-1119316] Phenylpropanoid biosynthesis - Setaria viridis [Pathway:R-CST-1119316] Phenylpropanoid biosynthesis - Camelina sativa [Pathway:R-PPA-1119316] Phenylpropanoid biosynthesis - Physcomitrella patens [Pathway:R-OPU-1119316] Phenylpropanoid biosynthesis - Oryza punctata [Pathway:R-MTR-1119316] Phenylpropanoid biosynthesis - Medicago truncatula [Pathway:R-HVU-1119316] Phenylpropanoid biosynthesis - Hordeum vulgare [Pathway:R-CLA-1119316] Phenylpropanoid biosynthesis - Citrullus lanatus [Pathway:R-AHY-1119316] Phenylpropanoid biosynthesis - Arachis hypogaea [Pathway:R-PPE-1119316] Phenylpropanoid biosynthesis - Prunus persica [Pathway:R-DCA-1119316] Phenylpropanoid biosynthesis - Daucus carota [Pathway:R-FVE-1119316] Phenylpropanoid biosynthesis - Fragaria vesca [Pathway:R-ETE-1119316] Phenylpropanoid biosynthesis - Eragrostis tef [Pathway:R-OSI-1119316] Phenylpropanoid biosynthesis - Oryza sativa Indica Group [Pathway:R-BOL-1119316] Phenylpropanoid biosynthesis - Brassica oleracea [Pathway:R-LSA-1119316] Phenylpropanoid biosynthesis - Lactuca sativa [Pathway:R-ECG-1119316] Phenylpropanoid biosynthesis - Echinochloa crus-galli [Pathway:R-BNA-1119316] Phenylpropanoid biosynthesis - Brassica napus [Pathway:R-PAB-1119316] Phenylpropanoid biosynthesis - Picea abies [Pathway:R-ORU-1119316] Phenylpropanoid biosynthesis - Oryza rufipogon [Pathway:R-DEX-1119316] Phenylpropanoid biosynthesis - Digitaria exilis [Pathway:R-OLO-1119316] Phenylpropanoid biosynthesis - Oryza longistaminata [Pathway:R-TCA-1119316] Phenylpropanoid biosynthesis - Theobroma cacao [Pathway:R-PAV-1119316] Phenylpropanoid biosynthesis - Prunus avium [Pathway:R-GSO-1119316] Phenylpropanoid biosynthesis - Glycine soja [Pathway:R-OBA-1119316] Phenylpropanoid biosynthesis - Oryza barthii [Pathway:R-TTU-1119316] Phenylpropanoid biosynthesis - Triticum turgidum [Pathway:R-MGU-1119316] Phenylpropanoid biosynthesis - Erythranthe guttata [Pathway:R-ACH-1119316] Phenylpropanoid biosynthesis - Actinidia chinensis [Pathway:R-SSP-1119316] Phenylpropanoid biosynthesis - Saccharum spontaneum [Pathway:R-CAN-1119316] Phenylpropanoid biosynthesis - Capsicum annuum [Pathway:R-SLY-1119316] Phenylpropanoid biosynthesis - Solanum lycopersicum [Pathway:R-SBI-1119316] Phenylpropanoid biosynthesis - Sorghum bicolor [Pathway:R-SHI-1119316] Phenylpropanoid biosynthesis - Salvia hispanica [Pathway:R-SCR-1119316] Phenylpropanoid biosynthesis - Secale cereale [Pathway:R-OGU-1119316] Phenylpropanoid biosynthesis - Oryza glumaepatula [Pathway:R-ZJA-1119316] Phenylpropanoid biosynthesis - Zoysia japonica [Pathway:R-OGL-1119316] Phenylpropanoid biosynthesis - Oryza glaberrima [Pathway:R-HLP-1119316] Phenylpropanoid biosynthesis - Humulus lupulus var. lupulus [Pathway:R-AHA-1119316] Phenylpropanoid biosynthesis - Arabidopsis halleri [Pathway:R-AIP-1119316] Phenylpropanoid biosynthesis - Arachis ipaensis [Pathway:R-BDI-1119316] Phenylpropanoid biosynthesis - Brachypodium distachyon [Pathway:R-VUN-1119316] Phenylpropanoid biosynthesis - Vigna unguiculata [Pathway:R-PTA-1119316] Phenylpropanoid biosynthesis - Pinus taeda [Pathway:R-SIN-1119316] Phenylpropanoid biosynthesis - Sesamum indicum [Pathway:R-CSK-1119316] Phenylpropanoid biosynthesis - Cannabis sativa subsp. indica [Pathway:R-CCP-1119316] Phenylpropanoid biosynthesis - Corchorus capsularis [Pathway:R-CSI-1119316] Phenylpropanoid biosynthesis - Citrus sinensis [Pathway:R-CAR-1119316] Phenylpropanoid biosynthesis - Cicer arietinum [Pathway:R-PED-1119316] Phenylpropanoid biosynthesis - Phyllostachys edulis [Pathway:R-BJU-1119316] Phenylpropanoid biosynthesis - Brassica juncea [Pathway:R-CML-1119316] Phenylpropanoid biosynthesis - Cucumis melo [Pathway:R-PVU-1119316] Phenylpropanoid biosynthesis - Phaseolus vulgaris [Pathway:R-PVE-1119316] Phenylpropanoid biosynthesis - Pistacia vera [Pathway:R-ZMA-1119316] Phenylpropanoid biosynthesis - Zea mays [Pathway:R-LAN-1119316] Phenylpropanoid biosynthesis - Lupinus angustifolius [Pathway:R-FCR-1119316] Phenylpropanoid biosynthesis - Ficus carica [Pathway:R-AUM-1119316] Phenylpropanoid biosynthesis - Aegilops umbellulata [Pathway:R-QSU-1119316] Phenylpropanoid biosynthesis - Quercus suber [Pathway:R-OEU-1119316] Phenylpropanoid biosynthesis - Olea europaea [Pathway:R-ACO-1119316] Phenylpropanoid biosynthesis - Ananas comosus [Pathway:R-TSP-1119316] Phenylpropanoid biosynthesis - Triticum spelta subsp. spelta [Pathway:R-SMO-1119316] Phenylpropanoid biosynthesis - Selaginella moellendorffii [Pathway:R-OES-1119316] Phenylpropanoid biosynthesis - Olea europaea var. sylvestris [Pathway:R-CCD-1119316] Phenylpropanoid biosynthesis - Cynara cardunculus var. scolymus [Pathway:R-OGR-1119316] Phenylpropanoid biosynthesis - Oryza meyeriana var. granulata [Pathway:R-COL-1119316] Phenylpropanoid biosynthesis - Corchorus olitorius
reviewed	[InstanceEdit:2958715] Dharmawardhana, DP, 2012-12-31
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-1119316
summation	[Summation:2958723] phenylpropanoid biosynthesis (lignin biosynthesis): Biosynth... [Summation:2850146] Developed by Gramene.org

Referrals

(hasEvent)

[Pathway:R-OSA-2744344] Secondary metabolism - Oryza sativa