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Carotenoid biosynthesis

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compartment	[Compartment:1141] plastid stroma
created	[InstanceEdit:1164949] Wu, Guanming, 2010-12-11
crossReference	[DatabaseIdentifier:1136099] RiceCyc:CAROTENOID-PWY
dbId	1119449
displayName	Carotenoid biosynthesis
edited	[InstanceEdit:3308525] Beorchia, Dylan, 2012-12-12 [InstanceEdit:4754272] Amoss, Kindra, 2013-09-12
eventOf	[Pathway:R-OSA-2744344] Secondary metabolism - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:23800] carotenoid biosynthetic process
hasDiagram	true
hasEvent	[Reaction:R-OSA-1119781] zeta-carotene+O2+a reduced electron acceptor->neurosporene+H2O+an oxidized electron acceptor - Oryza sativa [Reaction:R-OSA-1121336] Carotene 7,8-desaturase - Oryza sativa [Reaction:R-OSA-1120848] trans-lycopene->delta-carotene - Oryza sativa [Reaction:R-OSA-1121026] delta-carotene->alpha-carotene - Oryza sativa [Reaction:R-OSA-1120856] trans-lycopene->gamma-carotene - Oryza sativa [Reaction:R-OSA-1121334] gamma-carotene->beta-carotene - Oryza sativa [Reaction:R-OSA-1121290] antheraxanthin+L-ascorbate->zeaxanthin+L-dehydro-ascorbate+H2O - Oryza sativa [Reaction:R-OSA-1121480] beta-cryptoxanthin+O2+a reduced electron acceptor->zeaxanthin+H2O+an oxidized electron acceptor - Oryza sativa [Reaction:R-OSA-1121279] zeaxanthin+NAD(P)H+H++O2->antheraxanthin+NAD(P)++H2O - Oryza sativa [Reaction:R-OSA-1120471] violaxanthin+L-ascorbate->antheraxanthin+L-dehydro-ascorbate+H2O - Oryza sativa [Reaction:R-OSA-1120465] antheraxanthin+NAD(P)H+H++O2->violaxanthin+NAD(P)++H2O - Oryza sativa [Reaction:R-OSA-1120187] violaxanthin->trans-neoxanthin - Oryza sativa [Reaction:R-OSA-1121385] alpha-carotene+NADPH+O2->zeinoxanthin+NADP++H2O - Oryza sativa [Reaction:R-OSA-1121378] zeinoxanthin+NADPH+O2->lutein+NADP++H2O - Oryza sativa [Reaction:R-OSA-1121182] phytoene+O2+a reduced electron acceptor->phytofluene+H2O+an oxidized electron acceptor - Oryza sativa [Reaction:R-OSA-1121675] phytofluene+O2+a reduced electron acceptor->zeta-carotene+H2O+an oxidized electron acceptor - Oryza sativa [Reaction:R-OSA-1119823] Geranylgeranyl-diphosphate geranylgeranyltransferase - Oryza sativa [Reaction:R-OSA-1121606] prephytoene diphosphate->phytoene+diphosphate - Oryza sativa [Reaction:R-OSA-1120038] beta-carotene+O2+a reduced electron acceptor->beta-cryptoxanthin+H2O+an oxidized electron acceptor - Oryza sativa
isInDisease	false
isInferred	false
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Carotenoid biosynthesis pathway99766
orthologousEvent	[Pathway:R-SMO-1119449] Carotenoid biosynthesis - Selaginella moellendorffii [Pathway:R-SSP-1119449] Carotenoid biosynthesis - Saccharum spontaneum [Pathway:R-SLY-1119449] Carotenoid biosynthesis - Solanum lycopersicum [Pathway:R-CRE-1119449] Carotenoid biosynthesis - Chlamydomonas reinhardtii [Pathway:R-QSU-1119449] Carotenoid biosynthesis - Quercus suber [Pathway:R-ATR-1119449] Carotenoid biosynthesis - Amborella trichopoda [Pathway:R-BNA-1119449] Carotenoid biosynthesis - Brassica napus [Pathway:R-SPC-1119449] Carotenoid biosynthesis - Synechocystis sp. PCC 6803 [Pathway:R-TCA-1119449] Carotenoid biosynthesis - Theobroma cacao [Pathway:R-HLP-1119449] Carotenoid biosynthesis - Humulus lupulus var. lupulus [Pathway:R-ATA-1119449] Carotenoid biosynthesis - Aegilops tauschii [Pathway:R-AUM-1119449] Carotenoid biosynthesis - Aegilops umbellulata [Pathway:R-OPU-1119449] Carotenoid biosynthesis - Oryza punctata [Pathway:R-BOL-1119449] Carotenoid biosynthesis - Brassica oleracea [Pathway:R-OLU-1119449] Carotenoid biosynthesis - Ostreococcus lucimarinus [Pathway:R-CME-1119449] Carotenoid biosynthesis - Cyanidioschyzon merolae [Pathway:R-AIP-1119449] Carotenoid biosynthesis - Arachis ipaensis [Pathway:R-ZMY-1119449] Carotenoid biosynthesis - Zea mays ver5 [Pathway:R-DEX-1119449] Carotenoid biosynthesis - Digitaria exilis [Pathway:R-NAT-1119449] Carotenoid biosynthesis - Nicotiana attenuata [Pathway:R-DRO-1119449] Carotenoid biosynthesis - Dioscorea rotundata [Pathway:R-OLO-1119449] Carotenoid biosynthesis - Oryza longistaminata [Pathway:R-SIN-1119449] Carotenoid biosynthesis - Sesamum indicum [Pathway:R-LSA-1119449] Carotenoid biosynthesis - Lactuca sativa [Pathway:R-CRU-1119449] Carotenoid biosynthesis - Capsella rubella [Pathway:R-OEU-1119449] Carotenoid biosynthesis - Olea europaea [Pathway:R-BDI-1119449] Carotenoid biosynthesis - Brachypodium distachyon [Pathway:R-PPE-1119449] Carotenoid biosynthesis - Prunus persica [Pathway:R-ZJA-1119449] Carotenoid biosynthesis - Zoysia japonica [Pathway:R-TAE-1119449] Carotenoid biosynthesis - Triticum aestivum [Pathway:R-ASA-1119449] Carotenoid biosynthesis - Avena sativa [Pathway:R-QLO-1119449] Carotenoid biosynthesis - Quercus lobata [Pathway:R-BVU-1119449] Carotenoid biosynthesis - Beta vulgaris [Pathway:R-CCN-1119449] Carotenoid biosynthesis - Coffea canephora [Pathway:R-CSK-1119449] Carotenoid biosynthesis - Cannabis sativa subsp. indica [Pathway:R-OGU-1119449] Carotenoid biosynthesis - Oryza glumaepatula [Pathway:R-PHH-1119449] Carotenoid biosynthesis - Panicum hallii var. hallii ("HAL2") [Pathway:R-ORU-1119449] Carotenoid biosynthesis - Oryza rufipogon [Pathway:R-ECG-1119449] Carotenoid biosynthesis - Echinochloa crus-galli [Pathway:R-VUN-1119449] Carotenoid biosynthesis - Vigna unguiculata [Pathway:R-NNU-1119449] Carotenoid biosynthesis - Nelumbo nucifera [Pathway:R-CAN-1119449] Carotenoid biosynthesis - Capsicum annuum [Pathway:R-CCR-1119449] Carotenoid biosynthesis - Chondrus crispus [Pathway:R-MES-1119449] Carotenoid biosynthesis - Manihot esculenta [Pathway:R-ITR-1119449] Carotenoid biosynthesis - Ipomoea triloba [Pathway:R-ACH-1119449] Carotenoid biosynthesis - Actinidia chinensis [Pathway:R-CSA-1119449] Carotenoid biosynthesis - Cucumis sativus [Pathway:R-GSU-1119449] Carotenoid biosynthesis - Galdieria sulphuraria [Pathway:R-MAC-1119449] Carotenoid biosynthesis - Musa acuminata [Pathway:R-GMA-1119449] Carotenoid biosynthesis - Glycine max [Pathway:R-BRA-1119449] Carotenoid biosynthesis - Brassica rapa [Pathway:R-JRE-1119449] Carotenoid biosynthesis - Juglans regia [Pathway:R-PVU-1119449] Carotenoid biosynthesis - Phaseolus vulgaris [Pathway:R-NCO-1119449] Carotenoid biosynthesis - Nymphaea colorata [Pathway:R-GSO-1119449] Carotenoid biosynthesis - Glycine soja [Pathway:R-EGR-1119449] Carotenoid biosynthesis - Eucalyptus grandis [Pathway:R-SHI-1119449] Carotenoid biosynthesis - Salvia hispanica [Pathway:R-CCA-1119449] Carotenoid biosynthesis - Cajanus cajan [Pathway:R-VFA-1119449] Carotenoid biosynthesis - Vicia faba var. faba [Pathway:R-FVE-1119449] Carotenoid biosynthesis - Fragaria vesca [Pathway:R-BJU-1119449] Carotenoid biosynthesis - Brassica juncea [Pathway:R-CCD-1119449] Carotenoid biosynthesis - Cynara cardunculus var. scolymus [Pathway:R-MPO-1119449] Carotenoid biosynthesis - Marchantia polymorpha [Pathway:R-TPR-1119449] Carotenoid biosynthesis - Trifolium pratense [Pathway:R-RCH-1119449] Carotenoid biosynthesis - Rosa chinensis [Pathway:R-CCL-1119449] Carotenoid biosynthesis - Citrus clementina [Pathway:R-FCR-1119449] Carotenoid biosynthesis - Ficus carica [Pathway:R-ALY-1119449] Carotenoid biosynthesis - Arabidopsis lyrata [Pathway:R-CBA-1119449] Carotenoid biosynthesis - Chara braunii [Pathway:R-OSI-1119449] Carotenoid biosynthesis - Oryza sativa Indica Group [Pathway:R-HAN-1119449] Carotenoid biosynthesis - Helianthus annuus [Pathway:R-OGR-1119449] Carotenoid biosynthesis - Oryza meyeriana var. granulata [Pathway:R-PSA-1119449] Carotenoid biosynthesis - Pisum sativum [Pathway:R-CST-1119449] Carotenoid biosynthesis - Camelina sativa [Pathway:R-OES-1119449] Carotenoid biosynthesis - Olea europaea var. sylvestris [Pathway:R-MDO-1119449] Carotenoid biosynthesis - Malus domestica [Pathway:R-VVN-1119449] Carotenoid biosynthesis - Vitis vinifera [Pathway:R-SVI-1119449] Carotenoid biosynthesis - Setaria viridis [Pathway:R-SIT-1119449] Carotenoid biosynthesis - Setaria italica [Pathway:R-TSP-1119449] Carotenoid biosynthesis - Triticum spelta subsp. spelta [Pathway:R-CAR-1119449] Carotenoid biosynthesis - Cicer arietinum [Pathway:R-MTR-1119449] Carotenoid biosynthesis - Medicago truncatula [Pathway:R-PTA-1119449] Carotenoid biosynthesis - Pinus taeda [Pathway:R-AOF-1119449] Carotenoid biosynthesis - Asparagus officinalis [Pathway:R-OME-1119449] Carotenoid biosynthesis - Oryza meridionalis [Pathway:R-TUR-1119449] Carotenoid biosynthesis - Triticum urartu [Pathway:R-ACO-1119449] Carotenoid biosynthesis - Ananas comosus [Pathway:R-OAU-1119449] Carotenoid biosynthesis - Oryza australiensis [Pathway:R-DCA-1119449] Carotenoid biosynthesis - Daucus carota [Pathway:R-GRA-1119449] Carotenoid biosynthesis - Gossypium raimondii [Pathway:R-OBA-1119449] Carotenoid biosynthesis - Oryza barthii [Pathway:R-PSO-1119449] Carotenoid biosynthesis - Papaver somniferum [Pathway:R-ECU-1119449] Carotenoid biosynthesis - Eragrostis curvula [Pathway:R-ATH-1119449] Carotenoid biosynthesis - Arabidopsis thaliana [Pathway:R-VAN-1119449] Carotenoid biosynthesis - Vigna angularis [Pathway:R-LPE-1119449] Carotenoid biosynthesis - Leersia perrieri [Pathway:R-AHY-1119449] Carotenoid biosynthesis - Arachis hypogaea [Pathway:R-PPA-1119449] Carotenoid biosynthesis - Physcomitrella patens [Pathway:R-JCU-1119449] Carotenoid biosynthesis - Jatropha curcas [Pathway:R-CML-1119449] Carotenoid biosynthesis - Cucumis melo [Pathway:R-PTI-1119449] Carotenoid biosynthesis - Populus trichocarpa [Pathway:R-FEX-1119449] Carotenoid biosynthesis - Fraxinus excelsior (European ash) [Pathway:R-SCR-1119449] Carotenoid biosynthesis - Secale cereale [Pathway:R-PDA-1119449] Carotenoid biosynthesis - Phoenix dactylifera [Pathway:R-OGL-1119449] Carotenoid biosynthesis - Oryza glaberrima [Pathway:R-PAB-1119449] Carotenoid biosynthesis - Picea abies [Pathway:R-OKA-1119449] Carotenoid biosynthesis - Oryza sativa aus subgroup [Pathway:R-CQI-1119449] Carotenoid biosynthesis - Chenopodium quinoa [Pathway:R-OBR-1119449] Carotenoid biosynthesis - Oryza brachyantha [Pathway:R-TTU-1119449] Carotenoid biosynthesis - Triticum turgidum [Pathway:R-PHA-1119449] Carotenoid biosynthesis - Panicum hallii ("FIL2") [Pathway:R-SBI-1119449] Carotenoid biosynthesis - Sorghum bicolor [Pathway:R-ADU-1119449] Carotenoid biosynthesis - Arachis duranensis [Pathway:R-CSC-1119449] Carotenoid biosynthesis - Cannabis sativa [Pathway:R-ZMA-1119449] Carotenoid biosynthesis - Zea mays [Pathway:R-CLA-1119449] Carotenoid biosynthesis - Citrullus lanatus [Pathway:R-STU-1119449] Carotenoid biosynthesis - Solanum tuberosum [Pathway:R-CCI-1119449] Carotenoid biosynthesis - Corymbia citriodora [Pathway:R-LAN-1119449] Carotenoid biosynthesis - Lupinus angustifolius [Pathway:R-VRA-1119449] Carotenoid biosynthesis - Vigna radiata [Pathway:R-COL-1119449] Carotenoid biosynthesis - Corchorus olitorius [Pathway:R-AHA-1119449] Carotenoid biosynthesis - Arabidopsis halleri [Pathway:R-PED-1119449] Carotenoid biosynthesis - Phyllostachys edulis [Pathway:R-TDI-1119449] Carotenoid biosynthesis - Triticum dicoccoides [Pathway:R-MGU-1119449] Carotenoid biosynthesis - Erythranthe guttata [Pathway:R-OMI-1119449] Carotenoid biosynthesis - Oryza minuta [Pathway:R-ETE-1119449] Carotenoid biosynthesis - Eragrostis tef [Pathway:R-PAV-1119449] Carotenoid biosynthesis - Prunus avium [Pathway:R-LST-1119449] Carotenoid biosynthesis - Lathyrus sativus [Pathway:R-ONI-1119449] Carotenoid biosynthesis - Oryza nivara [Pathway:R-HVU-1119449] Carotenoid biosynthesis - Hordeum vulgare [Pathway:R-CCP-1119449] Carotenoid biosynthesis - Corchorus capsularis [Pathway:R-OOF-1119449] Carotenoid biosynthesis - Oryza officinalis [Pathway:R-LPR-1119449] Carotenoid biosynthesis - Lolium perenne [Pathway:R-PVE-1119449] Carotenoid biosynthesis - Pistacia vera [Pathway:R-CSI-1119449] Carotenoid biosynthesis - Citrus sinensis [Pathway:R-TTI-1119449] Carotenoid biosynthesis - Triticum timopheevii subsp. timopheevii
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-1119449
summation	[Summation:3308526] carotenoid biosynthesis [Summation:2850146] Developed by Gramene.org

Referrals

(hasEvent)

[Pathway:R-OSA-2744344] Secondary metabolism - Oryza sativa

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