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Cofactor biosyntheses

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created	[InstanceEdit:2867930] D'Eustachio, P, 2012-12-19
dbId	2867929
displayName	Cofactor biosyntheses
eventOf	[TopLevelPathway:R-OSA-2744345] Metabolism and regulation - Oryza sativa
hasDiagram	true
hasEvent	[Pathway:R-OSA-1119410] Ascorbate biosynthesis - Oryza sativa [Pathway:R-OSA-1119610] Biotin biosynthesis II - Oryza sativa [Pathway:R-OSA-1119412] Chlorophyll a biosynthesis I - Oryza sativa [Pathway:R-OSA-1119605] Chlorophyll a biosynthesis II - Oryza sativa [Pathway:R-OSA-1119320] Chlorophyll cycle - Oryza sativa [Pathway:R-OSA-1119379] Flavin biosynthesis - Oryza sativa [Pathway:R-OSA-1119617] Folate polyglutamylation I - Oryza sativa [Pathway:R-OSA-1119484] Folate polyglutamylation II - Oryza sativa [Pathway:R-OSA-1119342] Gamma-glutamyl cycle - Oryza sativa [Pathway:R-OSA-1119457] Geranyldiphosphate biosynthesis - Oryza sativa [Pathway:R-OSA-1119483] Glutathione biosynthesis - Oryza sativa [Pathway:R-OSA-1119437] Glutathione redox reactions I - Oryza sativa [Pathway:R-OSA-1119298] Glutathione redox reactions II - Oryza sativa [Pathway:R-OSA-1119464] Methylerythritol phosphate pathway - Oryza sativa [Pathway:R-OSA-1119384] NAD biosynthesis I (from aspartate) - Oryza sativa [Pathway:R-OSA-1119394] Pantothenate and coenzyme A biosynthesis III - Oryza sativa [Pathway:R-OSA-1119496] Pantothenate biosynthesis I - Oryza sativa [Pathway:R-OSA-1119544] Pantothenate biosynthesis II - Oryza sativa [Pathway:R-OSA-1119568] Pantothenate biosynthesis III - Oryza sativa [Pathway:R-OSA-1119498] Phylloquinone biosynthesis - Oryza sativa [Pathway:R-OSA-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza sativa [Pathway:R-OSA-1119534] Pyridoxal 5'-phosphate salvage pathway - Oryza sativa [Pathway:R-OSA-1119303] Pyridoxamine anabolism - Oryza sativa [Pathway:R-OSA-1119265] Tetrahydrofolate biosynthesis I - Oryza sativa [Pathway:R-OSA-1119523] Tetrahydrofolate biosynthesis II - Oryza sativa [Pathway:R-OSA-4827054] Tetrapyrrole biosynthesis I - Oryza sativa [Pathway:R-OSA-1119629] Thiamine biosynthesis - Oryza sativa [Pathway:R-OSA-1119526] Trans,trans-farnesyl diphosphate biosynthesis - Oryza sativa [Pathway:R-OSA-1119287] Vitamin E biosynthesis - Oryza sativa
isInDisease	false
isInferred	false
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Cofactor biosyntheses
orthologousEvent	[Pathway:R-MAC-2867929] Cofactor biosyntheses - Musa acuminata [Pathway:R-CRU-2867929] Cofactor biosyntheses - Capsella rubella [Pathway:R-CSK-2867929] Cofactor biosyntheses - Cannabis sativa subsp. indica [Pathway:R-OGR-2867929] Cofactor biosyntheses - Oryza meyeriana var. granulata [Pathway:R-JCU-2867929] Cofactor biosyntheses - Jatropha curcas [Pathway:R-PVU-2867929] Cofactor biosyntheses - Phaseolus vulgaris [Pathway:R-VRA-2867929] Cofactor biosyntheses - Vigna radiata [Pathway:R-LAN-2867929] Cofactor biosyntheses - Lupinus angustifolius [Pathway:R-OMI-2867929] Cofactor biosyntheses - Oryza minuta [Pathway:R-JRE-2867929] Cofactor biosyntheses - Juglans regia [Pathway:R-OBR-2867929] Cofactor biosyntheses - Oryza brachyantha [Pathway:R-PVE-2867929] Cofactor biosyntheses - Pistacia vera [Pathway:R-MPO-2867929] Cofactor biosyntheses - Marchantia polymorpha [Pathway:R-GMA-2867929] Cofactor biosyntheses - Glycine max [Pathway:R-ZMA-2867929] Cofactor biosyntheses - Zea mays [Pathway:R-CCD-2867929] Cofactor biosyntheses - Cynara cardunculus var. scolymus [Pathway:R-VAN-2867929] Cofactor biosyntheses - Vigna angularis [Pathway:R-OAU-2867929] Cofactor biosyntheses - Oryza australiensis [Pathway:R-HLH-2867929] Cofactor biosyntheses - Humulus lupulus [Pathway:R-ECU-2867929] Cofactor biosyntheses - Eragrostis curvula [Pathway:R-VUN-2867929] Cofactor biosyntheses - Vigna unguiculata [Pathway:R-BDI-2867929] Cofactor biosyntheses - Brachypodium distachyon [Pathway:R-CML-2867929] Cofactor biosyntheses - Cucumis melo [Pathway:R-CME-2867929] Cofactor biosyntheses - Cyanidioschyzon merolae [Pathway:R-CAR-2867929] Cofactor biosyntheses - Cicer arietinum [Pathway:R-AHY-2867929] Cofactor biosyntheses - Arachis hypogaea [Pathway:R-MGU-2867929] Cofactor biosyntheses - Erythranthe guttata [Pathway:R-FCR-2867929] Cofactor biosyntheses - Ficus carica [Pathway:R-EGR-2867929] Cofactor biosyntheses - Eucalyptus grandis [Pathway:R-PHA-2867929] Cofactor biosyntheses - Panicum hallii ("FIL2") [Pathway:R-MTR-2867929] Cofactor biosyntheses - Medicago truncatula [Pathway:R-SLY-2867929] Cofactor biosyntheses - Solanum lycopersicum [Pathway:R-BNA-2867929] Cofactor biosyntheses - Brassica napus [Pathway:R-ECG-2867929] Cofactor biosyntheses - Echinochloa crus-galli [Pathway:R-CSA-2867929] Cofactor biosyntheses - Cucumis sativus [Pathway:R-SMO-2867929] Cofactor biosyntheses - Selaginella moellendorffii [Pathway:R-LSA-2867929] Cofactor biosyntheses - Lactuca sativa [Pathway:R-ACH-2867929] Cofactor biosyntheses - Actinidia chinensis [Pathway:R-GSU-2867929] Cofactor biosyntheses - Galdieria sulphuraria [Pathway:R-NAT-2867929] Cofactor biosyntheses - Nicotiana attenuata [Pathway:R-AUM-2867929] Cofactor biosyntheses - Aegilops umbellulata [Pathway:R-SVI-2867929] Cofactor biosyntheses - Setaria viridis [Pathway:R-CST-2867929] Cofactor biosyntheses - Camelina sativa [Pathway:R-ACO-2867929] Cofactor biosyntheses - Ananas comosus [Pathway:R-PHH-2867929] Cofactor biosyntheses - Panicum hallii var. hallii ("HAL2") [Pathway:R-COL-2867929] Cofactor biosyntheses - Corchorus olitorius [Pathway:R-PSA-2867929] Cofactor biosyntheses - Pisum sativum [Pathway:R-ATH-2867929] Cofactor biosyntheses - Arabidopsis thaliana [Pathway:R-TSP-2867929] Cofactor biosyntheses - Triticum spelta subsp. spelta [Pathway:R-CCP-2867929] Cofactor biosyntheses - Corchorus capsularis [Pathway:R-VVN-2867929] Cofactor biosyntheses - Vitis vinifera [Pathway:R-NNU-2867929] Cofactor biosyntheses - Nelumbo nucifera [Pathway:R-SIN-2867929] Cofactor biosyntheses - Sesamum indicum [Pathway:R-PAB-2867929] Cofactor biosyntheses - Picea abies [Pathway:R-PTA-2867929] Cofactor biosyntheses - Pinus taeda [Pathway:R-LPE-2867929] Cofactor biosyntheses - Leersia perrieri [Pathway:R-AOF-2867929] Cofactor biosyntheses - Asparagus officinalis [Pathway:R-STU-2867929] Cofactor biosyntheses - Solanum tuberosum [Pathway:R-ZMY-2867929] Cofactor biosyntheses - Zea mays ver5 [Pathway:R-PDA-2867929] Cofactor biosyntheses - Phoenix dactylifera [Pathway:R-DCA-2867929] Cofactor biosyntheses - Daucus carota [Pathway:R-OBA-2867929] Cofactor biosyntheses - Oryza barthii [Pathway:R-ADU-2867929] Cofactor biosyntheses - Arachis duranensis [Pathway:R-LST-2867929] Cofactor biosyntheses - Lathyrus sativus [Pathway:R-OLO-2867929] Cofactor biosyntheses - Oryza longistaminata [Pathway:R-TCA-2867929] Cofactor biosyntheses - Theobroma cacao [Pathway:R-BJU-2867929] Cofactor biosyntheses - Brassica juncea [Pathway:R-VFA-2867929] Cofactor biosyntheses - Vicia faba var. faba [Pathway:R-NCO-2867929] Cofactor biosyntheses - Nymphaea colorata [Pathway:R-BRA-2867929] Cofactor biosyntheses - Brassica rapa [Pathway:R-CBA-2867929] Cofactor biosyntheses - Chara braunii [Pathway:R-AIP-2867929] Cofactor biosyntheses - Arachis ipaensis [Pathway:R-ITR-2867929] Cofactor biosyntheses - Ipomoea triloba [Pathway:R-SIT-2867929] Cofactor biosyntheses - Setaria italica [Pathway:R-SBI-2867929] Cofactor biosyntheses - Sorghum bicolor [Pathway:R-MES-2867929] Cofactor biosyntheses - Manihot esculenta [Pathway:R-GSO-2867929] Cofactor biosyntheses - Glycine soja [Pathway:R-OES-2867929] Cofactor biosyntheses - Olea europaea var. sylvestris [Pathway:R-HLP-2867929] Cofactor biosyntheses - Humulus lupulus var. lupulus [Pathway:R-OGU-2867929] Cofactor biosyntheses - Oryza glumaepatula [Pathway:R-TTU-2867929] Cofactor biosyntheses - Triticum turgidum [Pathway:R-CCN-2867929] Cofactor biosyntheses - Coffea canephora [Pathway:R-AHA-2867929] Cofactor biosyntheses - Arabidopsis halleri [Pathway:R-OOF-2867929] Cofactor biosyntheses - Oryza officinalis [Pathway:R-ASA-2867929] Cofactor biosyntheses - Avena sativa [Pathway:R-PTI-2867929] Cofactor biosyntheses - Populus trichocarpa [Pathway:R-DRO-2867929] Cofactor biosyntheses - Dioscorea rotundata [Pathway:R-PPA-2867929] Cofactor biosyntheses - Physcomitrella patens [Pathway:R-FEX-2867929] Cofactor biosyntheses - Fraxinus excelsior (European ash) [Pathway:R-BVU-2867929] Cofactor biosyntheses - Beta vulgaris [Pathway:R-PSO-2867929] Cofactor biosyntheses - Papaver somniferum [Pathway:R-QLO-2867929] Cofactor biosyntheses - Quercus lobata [Pathway:R-ORU-2867929] Cofactor biosyntheses - Oryza rufipogon [Pathway:R-CSI-2867929] Cofactor biosyntheses - Citrus sinensis [Pathway:R-BOL-2867929] Cofactor biosyntheses - Brassica oleracea [Pathway:R-ATA-2867929] Cofactor biosyntheses - Aegilops tauschii [Pathway:R-CSC-2867929] Cofactor biosyntheses - Cannabis sativa [Pathway:R-CCR-2867929] Cofactor biosyntheses - Chondrus crispus [Pathway:R-CCI-2867929] Cofactor biosyntheses - Corymbia citriodora [Pathway:R-PED-2867929] Cofactor biosyntheses - Phyllostachys edulis [Pathway:R-OLU-2867929] Cofactor biosyntheses - Ostreococcus lucimarinus [Pathway:R-CAN-2867929] Cofactor biosyntheses - Capsicum annuum [Pathway:R-OEU-2867929] Cofactor biosyntheses - Olea europaea [Pathway:R-ATR-2867929] Cofactor biosyntheses - Amborella trichopoda [Pathway:R-HVU-2867929] Cofactor biosyntheses - Hordeum vulgare [Pathway:R-QSU-2867929] Cofactor biosyntheses - Quercus suber [Pathway:R-SSP-2867929] Cofactor biosyntheses - Saccharum spontaneum [Pathway:R-SCR-2867929] Cofactor biosyntheses - Secale cereale [Pathway:R-OPU-2867929] Cofactor biosyntheses - Oryza punctata [Pathway:R-SPC-2867929] Cofactor biosyntheses - Synechocystis sp. PCC 6803 [Pathway:R-TUR-2867929] Cofactor biosyntheses - Triticum urartu [Pathway:R-ZJA-2867929] Cofactor biosyntheses - Zoysia japonica [Pathway:R-OGL-2867929] Cofactor biosyntheses - Oryza glaberrima [Pathway:R-OSI-2867929] Cofactor biosyntheses - Oryza sativa Indica Group [Pathway:R-ETE-2867929] Cofactor biosyntheses - Eragrostis tef [Pathway:R-TTI-2867929] Cofactor biosyntheses - Triticum timopheevii subsp. timopheevii [Pathway:R-OKA-2867929] Cofactor biosyntheses - Oryza sativa aus subgroup [Pathway:R-RCH-2867929] Cofactor biosyntheses - Rosa chinensis [Pathway:R-LPR-2867929] Cofactor biosyntheses - Lolium perenne [Pathway:R-ALY-2867929] Cofactor biosyntheses - Arabidopsis lyrata [Pathway:R-SHI-2867929] Cofactor biosyntheses - Salvia hispanica [Pathway:R-TDI-2867929] Cofactor biosyntheses - Triticum dicoccoides [Pathway:R-FVE-2867929] Cofactor biosyntheses - Fragaria vesca [Pathway:R-CRE-2867929] Cofactor biosyntheses - Chlamydomonas reinhardtii [Pathway:R-PPE-2867929] Cofactor biosyntheses - Prunus persica [Pathway:R-TAE-2867929] Cofactor biosyntheses - Triticum aestivum [Pathway:R-CCL-2867929] Cofactor biosyntheses - Citrus clementina [Pathway:R-CQI-2867929] Cofactor biosyntheses - Chenopodium quinoa [Pathway:R-TPR-2867929] Cofactor biosyntheses - Trifolium pratense [Pathway:R-CLA-2867929] Cofactor biosyntheses - Citrullus lanatus [Pathway:R-DEX-2867929] Cofactor biosyntheses - Digitaria exilis [Pathway:R-MDO-2867929] Cofactor biosyntheses - Malus domestica [Pathway:R-ONI-2867929] Cofactor biosyntheses - Oryza nivara [Pathway:R-GRA-2867929] Cofactor biosyntheses - Gossypium raimondii [Pathway:R-CCA-2867929] Cofactor biosyntheses - Cajanus cajan [Pathway:R-PAV-2867929] Cofactor biosyntheses - Prunus avium [Pathway:R-OME-2867929] Cofactor biosyntheses - Oryza meridionalis [Pathway:R-HAN-2867929] Cofactor biosyntheses - Helianthus annuus
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-2867929

Referrals

(hasEvent)

[TopLevelPathway:R-OSA-2744345] Metabolism and regulation - Oryza sativa

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