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Thiamine biosynthesis

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compartment	[Compartment:70101] cytosol
created	[InstanceEdit:1164949] Wu, Guanming, 2010-12-11
crossReference	[DatabaseIdentifier:1149589] RiceCyc:THISYN-PWY
dbId	1119629
displayName	Thiamine biosynthesis
edited	[InstanceEdit:2875025] Amoss, Kindra, 2012-12-14
eventOf	[Pathway:R-OSA-2867929] Cofactor biosyntheses - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:25253] thiamine biosynthetic process
hasDiagram	true
hasEvent	[Reaction:R-OSA-1121267] thiamine kinase - Oryza sativa [Reaction:R-OSA-1121342] 5-aminoimidazole ribonucleotide->hydroxymethylpyrimidine phosphate - Oryza sativa [Reaction:R-OSA-1120689] hydroxymethylpyrimidine kinase - Oryza sativa [Reaction:R-OSA-1121582] phosphomethylpyrimidine kinase - Oryza sativa [Reaction:R-OSA-1121448] hydroxyethylthiazole kinase - Oryza sativa [Reaction:R-OSA-1121157] 1-deoxy-D-xylulose-5-phosphate synthase - Oryza sativa [Reaction:R-OSA-1120781] L-tyrosine+1-deoxy-D-xylulose 5-phosphate+a ThiS persulfide->a ThiF protein+4-methyl-5-(beta-hydroxyethyl)thiazole phosphate+4-hydroxybenzyl alcohol+C1 of tyrosine+a ThiS sulfur-carrier protein - Oryza sativa [Reaction:R-OSA-1121083] thiamine-phosphate diphosphorylase - Oryza sativa [Reaction:R-OSA-1119677] thiamine-phosphate kinase - Oryza sativa
isInDisease	false
isInferred	false
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Thiamine biosynthesis Thiamin biosynthesis Vitamin B₁ biosynthesis pathway101150
orthologousEvent	[Pathway:R-VVN-1119629] Thiamine biosynthesis - Vitis vinifera [Pathway:R-VAN-1119629] Thiamine biosynthesis - Vigna angularis [Pathway:R-GRA-1119629] Thiamine biosynthesis - Gossypium raimondii [Pathway:R-VUN-1119629] Thiamine biosynthesis - Vigna unguiculata [Pathway:R-OBA-1119629] Thiamine biosynthesis - Oryza barthii [Pathway:R-ATA-1119629] Thiamine biosynthesis - Aegilops tauschii [Pathway:R-SMO-1119629] Thiamine biosynthesis - Selaginella moellendorffii [Pathway:R-CML-1119629] Thiamine biosynthesis - Cucumis melo [Pathway:R-MES-1119629] Thiamine biosynthesis - Manihot esculenta [Pathway:R-ITR-1119629] Thiamine biosynthesis - Ipomoea triloba [Pathway:R-CCP-1119629] Thiamine biosynthesis - Corchorus capsularis [Pathway:R-TPR-1119629] Thiamine biosynthesis - Trifolium pratense [Pathway:R-CCR-1119629] Thiamine biosynthesis - Chondrus crispus [Pathway:R-PTI-1119629] Thiamine biosynthesis - Populus trichocarpa [Pathway:R-ACH-1119629] Thiamine biosynthesis - Actinidia chinensis [Pathway:R-LSA-1119629] Thiamine biosynthesis - Lactuca sativa [Pathway:R-OGL-1119629] Thiamine biosynthesis - Oryza glaberrima [Pathway:R-CSI-1119629] Thiamine biosynthesis - Citrus sinensis [Pathway:R-ORU-1119629] Thiamine biosynthesis - Oryza rufipogon [Pathway:R-SSP-1119629] Thiamine biosynthesis - Saccharum spontaneum [Pathway:R-OKA-1119629] Thiamine biosynthesis - Oryza sativa aus subgroup [Pathway:R-OBR-1119629] Thiamine biosynthesis - Oryza brachyantha [Pathway:R-TTU-1119629] Thiamine biosynthesis - Triticum turgidum [Pathway:R-SCR-1119629] Thiamine biosynthesis - Secale cereale [Pathway:R-SIN-1119629] Thiamine biosynthesis - Sesamum indicum [Pathway:R-ZJA-1119629] Thiamine biosynthesis - Zoysia japonica [Pathway:R-GSO-1119629] Thiamine biosynthesis - Glycine soja [Pathway:R-CRE-1119629] Thiamine biosynthesis - Chlamydomonas reinhardtii [Pathway:R-PHH-1119629] Thiamine biosynthesis - Panicum hallii var. hallii ("HAL2") [Pathway:R-CCN-1119629] Thiamine biosynthesis - Coffea canephora [Pathway:R-MDO-1119629] Thiamine biosynthesis - Malus domestica [Pathway:R-OSI-1119629] Thiamine biosynthesis - Oryza sativa Indica Group [Pathway:R-ONI-1119629] Thiamine biosynthesis - Oryza nivara [Pathway:R-CME-1119629] Thiamine biosynthesis - Cyanidioschyzon merolae [Pathway:R-TSP-1119629] Thiamine biosynthesis - Triticum spelta subsp. spelta [Pathway:R-PAB-1119629] Thiamine biosynthesis - Picea abies [Pathway:R-OOF-1119629] Thiamine biosynthesis - Oryza officinalis [Pathway:R-BJU-1119629] Thiamine biosynthesis - Brassica juncea [Pathway:R-PED-1119629] Thiamine biosynthesis - Phyllostachys edulis [Pathway:R-CSA-1119629] Thiamine biosynthesis - Cucumis sativus [Pathway:R-HLH-1119629] Thiamine biosynthesis - Humulus lupulus [Pathway:R-JCU-1119629] Thiamine biosynthesis - Jatropha curcas [Pathway:R-CCA-1119629] Thiamine biosynthesis - Cajanus cajan [Pathway:R-LST-1119629] Thiamine biosynthesis - Lathyrus sativus [Pathway:R-MAC-1119629] Thiamine biosynthesis - Musa acuminata [Pathway:R-CQI-1119629] Thiamine biosynthesis - Chenopodium quinoa [Pathway:R-AHY-1119629] Thiamine biosynthesis - Arachis hypogaea [Pathway:R-CRU-1119629] Thiamine biosynthesis - Capsella rubella [Pathway:R-EGR-1119629] Thiamine biosynthesis - Eucalyptus grandis [Pathway:R-OLU-1119629] Thiamine biosynthesis - Ostreococcus lucimarinus [Pathway:R-GMA-1119629] Thiamine biosynthesis - Glycine max [Pathway:R-PAV-1119629] Thiamine biosynthesis - Prunus avium [Pathway:R-AIP-1119629] Thiamine biosynthesis - Arachis ipaensis [Pathway:R-NCO-1119629] Thiamine biosynthesis - Nymphaea colorata [Pathway:R-DRO-1119629] Thiamine biosynthesis - Dioscorea rotundata [Pathway:R-HVU-1119629] Thiamine biosynthesis - Hordeum vulgare [Pathway:R-BRA-1119629] Thiamine biosynthesis - Brassica rapa [Pathway:R-CBA-1119629] Thiamine biosynthesis - Chara braunii [Pathway:R-PTA-1119629] Thiamine biosynthesis - Pinus taeda [Pathway:R-CCD-1119629] Thiamine biosynthesis - Cynara cardunculus var. scolymus [Pathway:R-CCL-1119629] Thiamine biosynthesis - Citrus clementina [Pathway:R-PSA-1119629] Thiamine biosynthesis - Pisum sativum [Pathway:R-ECU-1119629] Thiamine biosynthesis - Eragrostis curvula [Pathway:R-TTI-1119629] Thiamine biosynthesis - Triticum timopheevii subsp. timopheevii [Pathway:R-RCH-1119629] Thiamine biosynthesis - Rosa chinensis [Pathway:R-LPE-1119629] Thiamine biosynthesis - Leersia perrieri [Pathway:R-GSU-1119629] Thiamine biosynthesis - Galdieria sulphuraria [Pathway:R-AHA-1119629] Thiamine biosynthesis - Arabidopsis halleri [Pathway:R-ALY-1119629] Thiamine biosynthesis - Arabidopsis lyrata [Pathway:R-TDI-1119629] Thiamine biosynthesis - Triticum dicoccoides [Pathway:R-AOF-1119629] Thiamine biosynthesis - Asparagus officinalis [Pathway:R-FEX-1119629] Thiamine biosynthesis - Fraxinus excelsior (European ash) [Pathway:R-OAU-1119629] Thiamine biosynthesis - Oryza australiensis [Pathway:R-ASA-1119629] Thiamine biosynthesis - Avena sativa [Pathway:R-BDI-1119629] Thiamine biosynthesis - Brachypodium distachyon [Pathway:R-BVU-1119629] Thiamine biosynthesis - Beta vulgaris [Pathway:R-NNU-1119629] Thiamine biosynthesis - Nelumbo nucifera [Pathway:R-QSU-1119629] Thiamine biosynthesis - Quercus suber [Pathway:R-CAR-1119629] Thiamine biosynthesis - Cicer arietinum [Pathway:R-HAN-1119629] Thiamine biosynthesis - Helianthus annuus [Pathway:R-ZMY-1119629] Thiamine biosynthesis - Zea mays ver5 [Pathway:R-OME-1119629] Thiamine biosynthesis - Oryza meridionalis [Pathway:R-VFA-1119629] Thiamine biosynthesis - Vicia faba var. faba [Pathway:R-BOL-1119629] Thiamine biosynthesis - Brassica oleracea [Pathway:R-ECG-1119629] Thiamine biosynthesis - Echinochloa crus-galli [Pathway:R-SLY-1119629] Thiamine biosynthesis - Solanum lycopersicum [Pathway:R-JRE-1119629] Thiamine biosynthesis - Juglans regia [Pathway:R-TCA-1119629] Thiamine biosynthesis - Theobroma cacao [Pathway:R-CAN-1119629] Thiamine biosynthesis - Capsicum annuum [Pathway:R-VRA-1119629] Thiamine biosynthesis - Vigna radiata [Pathway:R-DCA-1119629] Thiamine biosynthesis - Daucus carota [Pathway:R-SPC-1119629] Thiamine biosynthesis - Synechocystis sp. PCC 6803 [Pathway:R-PPA-1119629] Thiamine biosynthesis - Physcomitrella patens [Pathway:R-NAT-1119629] Thiamine biosynthesis - Nicotiana attenuata [Pathway:R-CLA-1119629] Thiamine biosynthesis - Citrullus lanatus [Pathway:R-SBI-1119629] Thiamine biosynthesis - Sorghum bicolor [Pathway:R-OGU-1119629] Thiamine biosynthesis - Oryza glumaepatula [Pathway:R-CSC-1119629] Thiamine biosynthesis - Cannabis sativa [Pathway:R-ATH-1119629] Thiamine biosynthesis - Arabidopsis thaliana [Pathway:R-TAE-1119629] Thiamine biosynthesis - Triticum aestivum [Pathway:R-PPE-1119629] Thiamine biosynthesis - Prunus persica [Pathway:R-ETE-1119629] Thiamine biosynthesis - Eragrostis tef [Pathway:R-SVI-1119629] Thiamine biosynthesis - Setaria viridis [Pathway:R-SHI-1119629] Thiamine biosynthesis - Salvia hispanica [Pathway:R-OES-1119629] Thiamine biosynthesis - Olea europaea var. sylvestris [Pathway:R-CSK-1119629] Thiamine biosynthesis - Cannabis sativa subsp. indica [Pathway:R-CCI-1119629] Thiamine biosynthesis - Corymbia citriodora [Pathway:R-ADU-1119629] Thiamine biosynthesis - Arachis duranensis [Pathway:R-DEX-1119629] Thiamine biosynthesis - Digitaria exilis [Pathway:R-MPO-1119629] Thiamine biosynthesis - Marchantia polymorpha [Pathway:R-PHA-1119629] Thiamine biosynthesis - Panicum hallii ("FIL2") [Pathway:R-PVU-1119629] Thiamine biosynthesis - Phaseolus vulgaris [Pathway:R-OLO-1119629] Thiamine biosynthesis - Oryza longistaminata [Pathway:R-BNA-1119629] Thiamine biosynthesis - Brassica napus [Pathway:R-MGU-1119629] Thiamine biosynthesis - Erythranthe guttata [Pathway:R-QLO-1119629] Thiamine biosynthesis - Quercus lobata [Pathway:R-OEU-1119629] Thiamine biosynthesis - Olea europaea [Pathway:R-SIT-1119629] Thiamine biosynthesis - Setaria italica [Pathway:R-TUR-1119629] Thiamine biosynthesis - Triticum urartu [Pathway:R-MTR-1119629] Thiamine biosynthesis - Medicago truncatula [Pathway:R-ATR-1119629] Thiamine biosynthesis - Amborella trichopoda [Pathway:R-PDA-1119629] Thiamine biosynthesis - Phoenix dactylifera [Pathway:R-STU-1119629] Thiamine biosynthesis - Solanum tuberosum [Pathway:R-CST-1119629] Thiamine biosynthesis - Camelina sativa [Pathway:R-OGR-1119629] Thiamine biosynthesis - Oryza meyeriana var. granulata [Pathway:R-FVE-1119629] Thiamine biosynthesis - Fragaria vesca [Pathway:R-PSO-1119629] Thiamine biosynthesis - Papaver somniferum [Pathway:R-FCR-1119629] Thiamine biosynthesis - Ficus carica [Pathway:R-OMI-1119629] Thiamine biosynthesis - Oryza minuta [Pathway:R-PVE-1119629] Thiamine biosynthesis - Pistacia vera [Pathway:R-LPR-1119629] Thiamine biosynthesis - Lolium perenne [Pathway:R-COL-1119629] Thiamine biosynthesis - Corchorus olitorius [Pathway:R-ACO-1119629] Thiamine biosynthesis - Ananas comosus [Pathway:R-LAN-1119629] Thiamine biosynthesis - Lupinus angustifolius [Pathway:R-ZMA-1119629] Thiamine biosynthesis - Zea mays [Pathway:R-AUM-1119629] Thiamine biosynthesis - Aegilops umbellulata [Pathway:R-OPU-1119629] Thiamine biosynthesis - Oryza punctata [Pathway:R-HLP-1119629] Thiamine biosynthesis - Humulus lupulus var. lupulus
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-1119629
summation	[Summation:2875019] thiamine biosynthesis [Summation:2850146] Developed by Gramene.org

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[Pathway:R-OSA-2867929] Cofactor biosyntheses - Oryza sativa

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