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Pyridoxal 5'-phosphate biosynthesis

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compartment	[Compartment:70101] cytosol
created	[InstanceEdit:1164949] Wu, Guanming, 2010-12-11
crossReference	[DatabaseIdentifier:1135493] RiceCyc:PYRIDOXSYN-PWY
dbId	1119594
displayName	Pyridoxal 5'-phosphate biosynthesis
edited	[InstanceEdit:2872511] Amoss, Kindra, 2012-12-14 [InstanceEdit:2872519] Dharmawardhana, DP, 2012-12-18
eventOf	[Pathway:R-OSA-2867929] Cofactor biosyntheses - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:78199] pyridoxal phosphate biosynthetic process
hasDiagram	true
hasEvent	[Reaction:R-OSA-1120339] 4-hydroxythreonine-4-phosphate dehydrogenase - Oryza sativa [Reaction:R-OSA-1121389] (2S)-2-amino-3-oxo-4-phosphonooxybutanoate+H+->1-amino-propan-2-one-3-phosphate+CO2 - Oryza sativa [Reaction:R-OSA-1121157] 1-deoxy-D-xylulose-5-phosphate synthase - Oryza sativa [Reaction:R-OSA-1119778] 1-deoxy-D-xylulose 5-phosphate+1-amino-propan-2-one-3-phosphate->pyridoxine-5'-phosphate+phosphate+H2O - Oryza sativa [Reaction:R-OSA-1121353] pyridoxal 5'-phosphate synthase - Oryza sativa [Reaction:R-OSA-1120086] D-erythrose-4-phosphate+NAD++H2O->erythronate-4-phosphate+NADH+H+ - Oryza sativa [Reaction:R-OSA-1119816] erythronate-4-phosphate+NAD+->2-oxo-3-hydroxy-4-phosphobutanoate+NADH+H+ - Oryza sativa [Reaction:R-OSA-1120678] 2-oxo-3-hydroxy-4-phosphobutanoate+L-glutamate->4-(phosphonooxy)-threonine+alpha-ketoglutarate - Oryza sativa
isInDisease	false
isInferred	false
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Pyridoxal 5'-phosphate biosynthesis pathway101119
orthologousEvent	[Pathway:R-SHI-1119594] Pyridoxal 5'-phosphate biosynthesis - Salvia hispanica [Pathway:R-COL-1119594] Pyridoxal 5'-phosphate biosynthesis - Corchorus olitorius [Pathway:R-DRO-1119594] Pyridoxal 5'-phosphate biosynthesis - Dioscorea rotundata [Pathway:R-PPA-1119594] Pyridoxal 5'-phosphate biosynthesis - Physcomitrella patens [Pathway:R-SCR-1119594] Pyridoxal 5'-phosphate biosynthesis - Secale cereale [Pathway:R-TSP-1119594] Pyridoxal 5'-phosphate biosynthesis - Triticum spelta subsp. spelta [Pathway:R-DCA-1119594] Pyridoxal 5'-phosphate biosynthesis - Daucus carota [Pathway:R-CME-1119594] Pyridoxal 5'-phosphate biosynthesis - Cyanidioschyzon merolae [Pathway:R-OOF-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza officinalis [Pathway:R-ONI-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza nivara [Pathway:R-BOL-1119594] Pyridoxal 5'-phosphate biosynthesis - Brassica oleracea [Pathway:R-MDO-1119594] Pyridoxal 5'-phosphate biosynthesis - Malus domestica [Pathway:R-CSA-1119594] Pyridoxal 5'-phosphate biosynthesis - Cucumis sativus [Pathway:R-MGU-1119594] Pyridoxal 5'-phosphate biosynthesis - Erythranthe guttata [Pathway:R-DEX-1119594] Pyridoxal 5'-phosphate biosynthesis - Digitaria exilis [Pathway:R-ATR-1119594] Pyridoxal 5'-phosphate biosynthesis - Amborella trichopoda [Pathway:R-FEX-1119594] Pyridoxal 5'-phosphate biosynthesis - Fraxinus excelsior (European ash) [Pathway:R-CCD-1119594] Pyridoxal 5'-phosphate biosynthesis - Cynara cardunculus var. scolymus [Pathway:R-PHA-1119594] Pyridoxal 5'-phosphate biosynthesis - Panicum hallii ("FIL2") [Pathway:R-OMI-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza minuta [Pathway:R-GMA-1119594] Pyridoxal 5'-phosphate biosynthesis - Glycine max [Pathway:R-FCR-1119594] Pyridoxal 5'-phosphate biosynthesis - Ficus carica [Pathway:R-OES-1119594] Pyridoxal 5'-phosphate biosynthesis - Olea europaea var. sylvestris [Pathway:R-BVU-1119594] Pyridoxal 5'-phosphate biosynthesis - Beta vulgaris [Pathway:R-PVE-1119594] Pyridoxal 5'-phosphate biosynthesis - Pistacia vera [Pathway:R-CSK-1119594] Pyridoxal 5'-phosphate biosynthesis - Cannabis sativa subsp. indica [Pathway:R-ECU-1119594] Pyridoxal 5'-phosphate biosynthesis - Eragrostis curvula [Pathway:R-CRU-1119594] Pyridoxal 5'-phosphate biosynthesis - Capsella rubella [Pathway:R-OLU-1119594] Pyridoxal 5'-phosphate biosynthesis - Ostreococcus lucimarinus [Pathway:R-OEU-1119594] Pyridoxal 5'-phosphate biosynthesis - Olea europaea [Pathway:R-PSA-1119594] Pyridoxal 5'-phosphate biosynthesis - Pisum sativum [Pathway:R-CBA-1119594] Pyridoxal 5'-phosphate biosynthesis - Chara braunii [Pathway:R-VUN-1119594] Pyridoxal 5'-phosphate biosynthesis - Vigna unguiculata [Pathway:R-BDI-1119594] Pyridoxal 5'-phosphate biosynthesis - Brachypodium distachyon [Pathway:R-LPE-1119594] Pyridoxal 5'-phosphate biosynthesis - Leersia perrieri [Pathway:R-HAN-1119594] Pyridoxal 5'-phosphate biosynthesis - Helianthus annuus [Pathway:R-TTI-1119594] Pyridoxal 5'-phosphate biosynthesis - Triticum timopheevii subsp. timopheevii [Pathway:R-AHA-1119594] Pyridoxal 5'-phosphate biosynthesis - Arabidopsis halleri [Pathway:R-TDI-1119594] Pyridoxal 5'-phosphate biosynthesis - Triticum dicoccoides [Pathway:R-ITR-1119594] Pyridoxal 5'-phosphate biosynthesis - Ipomoea triloba [Pathway:R-SIT-1119594] Pyridoxal 5'-phosphate biosynthesis - Setaria italica [Pathway:R-AIP-1119594] Pyridoxal 5'-phosphate biosynthesis - Arachis ipaensis [Pathway:R-CAR-1119594] Pyridoxal 5'-phosphate biosynthesis - Cicer arietinum [Pathway:R-PDA-1119594] Pyridoxal 5'-phosphate biosynthesis - Phoenix dactylifera [Pathway:R-JRE-1119594] Pyridoxal 5'-phosphate biosynthesis - Juglans regia [Pathway:R-CCR-1119594] Pyridoxal 5'-phosphate biosynthesis - Chondrus crispus [Pathway:R-VFA-1119594] Pyridoxal 5'-phosphate biosynthesis - Vicia faba var. faba [Pathway:R-SSP-1119594] Pyridoxal 5'-phosphate biosynthesis - Saccharum spontaneum [Pathway:R-NAT-1119594] Pyridoxal 5'-phosphate biosynthesis - Nicotiana attenuata [Pathway:R-CCA-1119594] Pyridoxal 5'-phosphate biosynthesis - Cajanus cajan [Pathway:R-CRE-1119594] Pyridoxal 5'-phosphate biosynthesis - Chlamydomonas reinhardtii [Pathway:R-MAC-1119594] Pyridoxal 5'-phosphate biosynthesis - Musa acuminata [Pathway:R-SPC-1119594] Pyridoxal 5'-phosphate biosynthesis - Synechocystis sp. PCC 6803 [Pathway:R-TCA-1119594] Pyridoxal 5'-phosphate biosynthesis - Theobroma cacao [Pathway:R-VRA-1119594] Pyridoxal 5'-phosphate biosynthesis - Vigna radiata [Pathway:R-TAE-1119594] Pyridoxal 5'-phosphate biosynthesis - Triticum aestivum [Pathway:R-SLY-1119594] Pyridoxal 5'-phosphate biosynthesis - Solanum lycopersicum [Pathway:R-TTU-1119594] Pyridoxal 5'-phosphate biosynthesis - Triticum turgidum [Pathway:R-QLO-1119594] Pyridoxal 5'-phosphate biosynthesis - Quercus lobata [Pathway:R-AHY-1119594] Pyridoxal 5'-phosphate biosynthesis - Arachis hypogaea [Pathway:R-SVI-1119594] Pyridoxal 5'-phosphate biosynthesis - Setaria viridis [Pathway:R-CSC-1119594] Pyridoxal 5'-phosphate biosynthesis - Cannabis sativa [Pathway:R-LST-1119594] Pyridoxal 5'-phosphate biosynthesis - Lathyrus sativus [Pathway:R-ETE-1119594] Pyridoxal 5'-phosphate biosynthesis - Eragrostis tef [Pathway:R-CST-1119594] Pyridoxal 5'-phosphate biosynthesis - Camelina sativa [Pathway:R-OKA-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza sativa aus subgroup [Pathway:R-CLA-1119594] Pyridoxal 5'-phosphate biosynthesis - Citrullus lanatus [Pathway:R-ECG-1119594] Pyridoxal 5'-phosphate biosynthesis - Echinochloa crus-galli [Pathway:R-OSI-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza sativa Indica Group [Pathway:R-OLO-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza longistaminata [Pathway:R-BNA-1119594] Pyridoxal 5'-phosphate biosynthesis - Brassica napus [Pathway:R-ORU-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza rufipogon [Pathway:R-PAV-1119594] Pyridoxal 5'-phosphate biosynthesis - Prunus avium [Pathway:R-ACH-1119594] Pyridoxal 5'-phosphate biosynthesis - Actinidia chinensis [Pathway:R-CQI-1119594] Pyridoxal 5'-phosphate biosynthesis - Chenopodium quinoa [Pathway:R-BJU-1119594] Pyridoxal 5'-phosphate biosynthesis - Brassica juncea [Pathway:R-PSO-1119594] Pyridoxal 5'-phosphate biosynthesis - Papaver somniferum [Pathway:R-HVU-1119594] Pyridoxal 5'-phosphate biosynthesis - Hordeum vulgare [Pathway:R-AOF-1119594] Pyridoxal 5'-phosphate biosynthesis - Asparagus officinalis [Pathway:R-CCI-1119594] Pyridoxal 5'-phosphate biosynthesis - Corymbia citriodora [Pathway:R-ACO-1119594] Pyridoxal 5'-phosphate biosynthesis - Ananas comosus [Pathway:R-PED-1119594] Pyridoxal 5'-phosphate biosynthesis - Phyllostachys edulis [Pathway:R-ZMA-1119594] Pyridoxal 5'-phosphate biosynthesis - Zea mays [Pathway:R-JCU-1119594] Pyridoxal 5'-phosphate biosynthesis - Jatropha curcas [Pathway:R-LAN-1119594] Pyridoxal 5'-phosphate biosynthesis - Lupinus angustifolius [Pathway:R-OGR-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza meyeriana var. granulata [Pathway:R-BRA-1119594] Pyridoxal 5'-phosphate biosynthesis - Brassica rapa [Pathway:R-MTR-1119594] Pyridoxal 5'-phosphate biosynthesis - Medicago truncatula [Pathway:R-NCO-1119594] Pyridoxal 5'-phosphate biosynthesis - Nymphaea colorata [Pathway:R-SMO-1119594] Pyridoxal 5'-phosphate biosynthesis - Selaginella moellendorffii [Pathway:R-FVE-1119594] Pyridoxal 5'-phosphate biosynthesis - Fragaria vesca [Pathway:R-HLP-1119594] Pyridoxal 5'-phosphate biosynthesis - Humulus lupulus var. lupulus [Pathway:R-GSU-1119594] Pyridoxal 5'-phosphate biosynthesis - Galdieria sulphuraria [Pathway:R-TUR-1119594] Pyridoxal 5'-phosphate biosynthesis - Triticum urartu [Pathway:R-AUM-1119594] Pyridoxal 5'-phosphate biosynthesis - Aegilops umbellulata [Pathway:R-OPU-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza punctata [Pathway:R-OAU-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza australiensis [Pathway:R-CCP-1119594] Pyridoxal 5'-phosphate biosynthesis - Corchorus capsularis [Pathway:R-TPR-1119594] Pyridoxal 5'-phosphate biosynthesis - Trifolium pratense [Pathway:R-ASA-1119594] Pyridoxal 5'-phosphate biosynthesis - Avena sativa [Pathway:R-MES-1119594] Pyridoxal 5'-phosphate biosynthesis - Manihot esculenta [Pathway:R-PTA-1119594] Pyridoxal 5'-phosphate biosynthesis - Pinus taeda [Pathway:R-LPR-1119594] Pyridoxal 5'-phosphate biosynthesis - Lolium perenne [Pathway:R-RCH-1119594] Pyridoxal 5'-phosphate biosynthesis - Rosa chinensis [Pathway:R-VAN-1119594] Pyridoxal 5'-phosphate biosynthesis - Vigna angularis [Pathway:R-VVN-1119594] Pyridoxal 5'-phosphate biosynthesis - Vitis vinifera [Pathway:R-ALY-1119594] Pyridoxal 5'-phosphate biosynthesis - Arabidopsis lyrata [Pathway:R-EGR-1119594] Pyridoxal 5'-phosphate biosynthesis - Eucalyptus grandis [Pathway:R-CSI-1119594] Pyridoxal 5'-phosphate biosynthesis - Citrus sinensis [Pathway:R-STU-1119594] Pyridoxal 5'-phosphate biosynthesis - Solanum tuberosum [Pathway:R-OME-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza meridionalis [Pathway:R-CML-1119594] Pyridoxal 5'-phosphate biosynthesis - Cucumis melo [Pathway:R-ATA-1119594] Pyridoxal 5'-phosphate biosynthesis - Aegilops tauschii [Pathway:R-ZMY-1119594] Pyridoxal 5'-phosphate biosynthesis - Zea mays ver5 [Pathway:R-QSU-1119594] Pyridoxal 5'-phosphate biosynthesis - Quercus suber [Pathway:R-NNU-1119594] Pyridoxal 5'-phosphate biosynthesis - Nelumbo nucifera [Pathway:R-PTI-1119594] Pyridoxal 5'-phosphate biosynthesis - Populus trichocarpa [Pathway:R-CCL-1119594] Pyridoxal 5'-phosphate biosynthesis - Citrus clementina [Pathway:R-PVU-1119594] Pyridoxal 5'-phosphate biosynthesis - Phaseolus vulgaris [Pathway:R-GSO-1119594] Pyridoxal 5'-phosphate biosynthesis - Glycine soja [Pathway:R-OBR-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza brachyantha [Pathway:R-HLH-1119594] Pyridoxal 5'-phosphate biosynthesis - Humulus lupulus [Pathway:R-SBI-1119594] Pyridoxal 5'-phosphate biosynthesis - Sorghum bicolor [Pathway:R-CAN-1119594] Pyridoxal 5'-phosphate biosynthesis - Capsicum annuum [Pathway:R-LSA-1119594] Pyridoxal 5'-phosphate biosynthesis - Lactuca sativa [Pathway:R-OBA-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza barthii [Pathway:R-GRA-1119594] Pyridoxal 5'-phosphate biosynthesis - Gossypium raimondii [Pathway:R-PAB-1119594] Pyridoxal 5'-phosphate biosynthesis - Picea abies [Pathway:R-PHH-1119594] Pyridoxal 5'-phosphate biosynthesis - Panicum hallii var. hallii ("HAL2") [Pathway:R-MPO-1119594] Pyridoxal 5'-phosphate biosynthesis - Marchantia polymorpha [Pathway:R-OGL-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza glaberrima [Pathway:R-SIN-1119594] Pyridoxal 5'-phosphate biosynthesis - Sesamum indicum [Pathway:R-ATH-1119594] Pyridoxal 5'-phosphate biosynthesis - Arabidopsis thaliana [Pathway:R-ZJA-1119594] Pyridoxal 5'-phosphate biosynthesis - Zoysia japonica [Pathway:R-PPE-1119594] Pyridoxal 5'-phosphate biosynthesis - Prunus persica [Pathway:R-CCN-1119594] Pyridoxal 5'-phosphate biosynthesis - Coffea canephora [Pathway:R-OGU-1119594] Pyridoxal 5'-phosphate biosynthesis - Oryza glumaepatula [Pathway:R-ADU-1119594] Pyridoxal 5'-phosphate biosynthesis - Arachis duranensis
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-1119594
summation	[Summation:2872518] pyridoxal 5'-phosphate biosynthesis [Summation:2850146] Developed by Gramene.org

Referrals

(hasEvent)

[Pathway:R-OSA-2867929] Cofactor biosyntheses - Oryza sativa

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