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Regulatory network of nutrient accumulation

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authored	[InstanceEdit:9623906] Gupta, Parul, 2018-10-05
compartment	[Compartment:7660] nucleoplasm [Compartment:70101] cytosol [Compartment:1141] plastid stroma [Compartment:13951] Golgi-associated vesicle [Compartment:23283] protein storage vacuole [Compartment:17957] endoplasmic reticulum lumen [Compartment:263163] trans-Golgi network membrane
created	[InstanceEdit:9626508] Gupta, Parul, 2018-10-27
dbId	9626305
displayName	Regulatory network of nutrient accumulation
eventOf	[Pathway:R-OSA-9623902] Seed development - Oryza sativa
hasDiagram	true
hasEvent	[BlackBoxEvent:R-OSA-9626460] Transcription of BEIIb - Oryza sativa [BlackBoxEvent:R-OSA-9626515] Transcription of ISA1 - Oryza sativa [BlackBoxEvent:R-OSA-9626547] Transcription of PUL - Oryza sativa [BlackBoxEvent:R-OSA-9626549] Transcription of SBEI - Oryza sativa [BlackBoxEvent:R-OSA-9626392] Transcription of Wx - Oryza sativa [Pathway:R-OSA-1119477] Starch biosynthesis - Oryza sativa [BlackBoxEvent:R-OSA-9626451] Transcription of AGPL2 - Oryza sativa [Pathway:R-OSA-9626388] Storage protein biosynthesis - Oryza sativa [Reaction:R-OSA-9626486] Conversion of Rab5a:GDP into Rab5a:GTP - Oryza sativa [Reaction:R-OSA-9626466] Physical interaction of GPA3 with Rab5a via VPS9a - Oryza sativa [Reaction:R-OSA-9626325] Physical interaction of GPA3 with VPS9A - Oryza sativa [Reaction:R-OSA-9626296] Pho1-Dpe1 complex formation - Oryza sativa [Reaction:R-OSA-9626463] Synthesis of amylopectin - Oryza sativa [Reaction:R-OSA-9626348] Synthesis of amylose - Oryza sativa [Reaction:R-OSA-9626368] Synthesis of highly branched alpha-glucan - Oryza sativa [Reaction:R-OSA-9626473] Conversion of amylose to amylopectin - Oryza sativa [BlackBoxEvent:R-OSA-9630697] Translation of AGPL2 - Oryza sativa [BlackBoxEvent:R-OSA-9630690] Expression of PDIL1-1 - Oryza sativa [BlackBoxEvent:R-OSA-9630699] Expression of SSIIa - Oryza sativa [BlackBoxEvent:R-OSA-9630698] Expression of VPE1 - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:9626500] A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm [LiteratureReference:9626428] A cytosolic ADP-glucose pyrophosphorylase is a feature of graminaceous endosperms, but not of other starch-storing organs [LiteratureReference:9622179] A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality [LiteratureReference:9626578] An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene [LiteratureReference:9626485] Antisense inhibition of isoamylase alters the structure of amylopectin and the physicochemical properties of starch in rice endosperm [LiteratureReference:9626370] Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm [LiteratureReference:9609119] Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.) [LiteratureReference:9626487] Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm [LiteratureReference:9626490] Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm [LiteratureReference:9626299] Characterization of pullulanase (PUL)-deficient mutants of rice (Oryza sativa L.) and the function of PUL on starch biosynthesis in the developing rice endosperm [LiteratureReference:9626498] Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator [LiteratureReference:9623478] Compensation and interaction between RISBZ1 and RPBF during grain filling in rice [LiteratureReference:9626546] Critical roles of soluble starch synthase SSIIIa and granule-bound starch synthase Waxy in synthesizing resistant starch in rice [LiteratureReference:9626447] Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch [LiteratureReference:9626444] Essential amino acids of starch synthase IIa differentiate amylopectin structure and starch quality between japonica and indica rice varieties [LiteratureReference:9626565] Expression profiling of genes involved in starch synthesis in sink and source organs of rice [LiteratureReference:9626323] Function and characterization of starch synthase I using mutants in rice [LiteratureReference:9622242] Functional genomics based understanding of rice endosperm development [LiteratureReference:9626335] GLUTELIN PRECURSOR ACCUMULATION3 encodes a regulator of post-Golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm [LiteratureReference:9626330] GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development [LiteratureReference:9626331] Granule-bound starch synthase I is responsible for biosynthesis of extra-long unit chains of amylopectin in rice [LiteratureReference:9626548] Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.) [LiteratureReference:9626353] Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.) [LiteratureReference:9609044] MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress [LiteratureReference:9609134] MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice [LiteratureReference:9626458] Molecular cloning and expression analysis of three genes encoding starch synthase II in rice [LiteratureReference:9626478] Mutation of the plastidial alpha-glucan phosphorylase gene in rice affects the synthesis and structure of starch in the endosperm [LiteratureReference:9626347] Nucleotide and primary sequence of a major rice prolamine [LiteratureReference:9626534] Oligomerization of rice granule-bound starch synthase 1 modulates its activity regulation [LiteratureReference:9609006] OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa) [LiteratureReference:9626558] OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells [LiteratureReference:9626569] OsVPS9A functions cooperatively with OsRAB5A to regulate post-Golgi dense vesicle-mediated storage protein trafficking to the protein storage vacuole in rice endosperm cells [LiteratureReference:9626355] Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin [LiteratureReference:9626423] Protein disulfide isomerase-like protein 1-1 controls endosperm development through regulation of the amount and composition of seed proteins in rice [LiteratureReference:9626553] Rice Endosperm Starch Phosphorylase (Pho1) Assembles with Disproportionating Enzyme (Dpe1) to Form a Protein Complex That Enhances Synthesis of Malto-oligosaccharides [LiteratureReference:9609171] Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate [LiteratureReference:9626314] Rice endosperm-specific plastidial alpha-glucan phosphorylase is important for synthesis of short-chain malto-oligosaccharides [LiteratureReference:9626362] Sequence of three members and expression of a new major subfamily of glutelin genes from rice [LiteratureReference:9626350] Starch debranching enzyme (R-enzyme or pullulanase) from developing rice endosperm: purification, cDNA and chromosomal localization of the gene [LiteratureReference:9626446] Starch-branching enzyme I-deficient mutation specifically affects the structure and properties of starch in rice endosperm [LiteratureReference:9626340] Structure and expression of the rice glutelin multigene family [LiteratureReference:9626504] Structures of starches from rice mutants deficient in the starch synthase isozyme SSI or SSIIIa [LiteratureReference:9623488] Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes [LiteratureReference:9609197] The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice [LiteratureReference:9626561] The failure to express a protein disulphide isomerase-like protein results in a floury endosperm and an endoplasmic reticulum stress response in rice [LiteratureReference:9626409] The rice endosperm ADP-glucose pyrophosphorylase large subunit is essential for optimal catalysis and allosteric regulation of the heterotetrameric enzyme [LiteratureReference:9626455] The rice mutant esp2 greatly accumulates the glutelin precursor and deletes the protein disulfide isomerase [LiteratureReference:9626507] The small GTPase Rab5a is essential for intracellular transport of proglutelin from the Golgi apparatus to the protein storage vacuole and endosomal membrane organization in developing rice endosperm [LiteratureReference:9626334] The structure of starch can be manipulated by changing the expression levels of starch branching enzyme IIb in rice endosperm [LiteratureReference:9626338] The vacuolar processing enzyme OsVPE1 is required for efficient glutelin processing in rice [LiteratureReference:9626431] Vacuolar processing enzyme plays an essential role in the crystalline structure of glutelin in rice seed
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Regulatory network of nutrient accumulation
orthologousEvent	[Pathway:R-SVI-9626305] Regulatory network of nutrient accumulation - Setaria viridis [Pathway:R-DRO-9626305] Regulatory network of nutrient accumulation - Dioscorea rotundata [Pathway:R-COL-9626305] Regulatory network of nutrient accumulation - Corchorus olitorius [Pathway:R-OGL-9626305] Regulatory network of nutrient accumulation - Oryza glaberrima [Pathway:R-OLO-9626305] Regulatory network of nutrient accumulation - Oryza longistaminata [Pathway:R-TUR-9626305] Regulatory network of nutrient accumulation - Triticum urartu [Pathway:R-PAB-9626305] Regulatory network of nutrient accumulation - Picea abies [Pathway:R-LSA-9626305] Regulatory network of nutrient accumulation - Lactuca sativa [Pathway:R-ACO-9626305] Regulatory network of nutrient accumulation - Ananas comosus [Pathway:R-OLU-9626305] Regulatory network of nutrient accumulation - Ostreococcus lucimarinus [Pathway:R-OOF-9626305] Regulatory network of nutrient accumulation - Oryza officinalis [Pathway:R-SLY-9626305] Regulatory network of nutrient accumulation - Solanum lycopersicum [Pathway:R-PPE-9626305] Regulatory network of nutrient accumulation - Prunus persica [Pathway:R-TAE-9626305] Regulatory network of nutrient accumulation - Triticum aestivum [Pathway:R-FEX-9626305] Regulatory network of nutrient accumulation - Fraxinus excelsior (European ash) [Pathway:R-MGU-9626305] Regulatory network of nutrient accumulation - Erythranthe guttata [Pathway:R-GSO-9626305] Regulatory network of nutrient accumulation - Glycine soja [Pathway:R-CAN-9626305] Regulatory network of nutrient accumulation - Capsicum annuum [Pathway:R-OBR-9626305] Regulatory network of nutrient accumulation - Oryza brachyantha [Pathway:R-ACH-9626305] Regulatory network of nutrient accumulation - Actinidia chinensis [Pathway:R-PHA-9626305] Regulatory network of nutrient accumulation - Panicum hallii ("FIL2") [Pathway:R-CCI-9626305] Regulatory network of nutrient accumulation - Corymbia citriodora [Pathway:R-CRE-9626305] Regulatory network of nutrient accumulation - Chlamydomonas reinhardtii [Pathway:R-QSU-9626305] Regulatory network of nutrient accumulation - Quercus suber [Pathway:R-ATA-9626305] Regulatory network of nutrient accumulation - Aegilops tauschii [Pathway:R-PED-9626305] Regulatory network of nutrient accumulation - Phyllostachys edulis [Pathway:R-FCR-9626305] Regulatory network of nutrient accumulation - Ficus carica [Pathway:R-JRE-9626305] Regulatory network of nutrient accumulation - Juglans regia [Pathway:R-PTI-9626305] Regulatory network of nutrient accumulation - Populus trichocarpa [Pathway:R-HAN-9626305] Regulatory network of nutrient accumulation - Helianthus annuus [Pathway:R-LPR-9626305] Regulatory network of nutrient accumulation - Lolium perenne [Pathway:R-HLH-9626305] Regulatory network of nutrient accumulation - Humulus lupulus [Pathway:R-CCN-9626305] Regulatory network of nutrient accumulation - Coffea canephora [Pathway:R-CAR-9626305] Regulatory network of nutrient accumulation - Cicer arietinum [Pathway:R-VAN-9626305] Regulatory network of nutrient accumulation - Vigna angularis [Pathway:R-TTI-9626305] Regulatory network of nutrient accumulation - Triticum timopheevii subsp. timopheevii [Pathway:R-HLP-9626305] Regulatory network of nutrient accumulation - Humulus lupulus var. lupulus [Pathway:R-TPR-9626305] Regulatory network of nutrient accumulation - Trifolium pratense [Pathway:R-OGR-9626305] Regulatory network of nutrient accumulation - Oryza meyeriana var. granulata [Pathway:R-CRU-9626305] Regulatory network of nutrient accumulation - Capsella rubella [Pathway:R-BDI-9626305] Regulatory network of nutrient accumulation - Brachypodium distachyon [Pathway:R-MPO-9626305] Regulatory network of nutrient accumulation - Marchantia polymorpha [Pathway:R-SBI-9626305] Regulatory network of nutrient accumulation - Sorghum bicolor [Pathway:R-AHA-9626305] Regulatory network of nutrient accumulation - Arabidopsis halleri [Pathway:R-OBA-9626305] Regulatory network of nutrient accumulation - Oryza barthii [Pathway:R-HVU-9626305] Regulatory network of nutrient accumulation - Hordeum vulgare [Pathway:R-OPU-9626305] Regulatory network of nutrient accumulation - Oryza punctata [Pathway:R-JCU-9626305] Regulatory network of nutrient accumulation - Jatropha curcas [Pathway:R-AUM-9626305] Regulatory network of nutrient accumulation - Aegilops umbellulata [Pathway:R-BJU-9626305] Regulatory network of nutrient accumulation - Brassica juncea [Pathway:R-GRA-9626305] Regulatory network of nutrient accumulation - Gossypium raimondii [Pathway:R-CCD-9626305] Regulatory network of nutrient accumulation - Cynara cardunculus var. scolymus [Pathway:R-CCA-9626305] Regulatory network of nutrient accumulation - Cajanus cajan [Pathway:R-MAC-9626305] Regulatory network of nutrient accumulation - Musa acuminata [Pathway:R-TCA-9626305] Regulatory network of nutrient accumulation - Theobroma cacao [Pathway:R-ALY-9626305] Regulatory network of nutrient accumulation - Arabidopsis lyrata [Pathway:R-MTR-9626305] Regulatory network of nutrient accumulation - Medicago truncatula [Pathway:R-AIP-9626305] Regulatory network of nutrient accumulation - Arachis ipaensis [Pathway:R-PDA-9626305] Regulatory network of nutrient accumulation - Phoenix dactylifera [Pathway:R-SIT-9626305] Regulatory network of nutrient accumulation - Setaria italica [Pathway:R-CSK-9626305] Regulatory network of nutrient accumulation - Cannabis sativa subsp. indica [Pathway:R-PVU-9626305] Regulatory network of nutrient accumulation - Phaseolus vulgaris [Pathway:R-FVE-9626305] Regulatory network of nutrient accumulation - Fragaria vesca [Pathway:R-CCP-9626305] Regulatory network of nutrient accumulation - Corchorus capsularis [Pathway:R-SCR-9626305] Regulatory network of nutrient accumulation - Secale cereale [Pathway:R-CST-9626305] Regulatory network of nutrient accumulation - Camelina sativa [Pathway:R-QLO-9626305] Regulatory network of nutrient accumulation - Quercus lobata [Pathway:R-CLA-9626305] Regulatory network of nutrient accumulation - Citrullus lanatus [Pathway:R-CBA-9626305] Regulatory network of nutrient accumulation - Chara braunii [Pathway:R-ORU-9626305] Regulatory network of nutrient accumulation - Oryza rufipogon [Pathway:R-DEX-9626305] Regulatory network of nutrient accumulation - Digitaria exilis [Pathway:R-LST-9626305] Regulatory network of nutrient accumulation - Lathyrus sativus [Pathway:R-AHY-9626305] Regulatory network of nutrient accumulation - Arachis hypogaea [Pathway:R-CSC-9626305] Regulatory network of nutrient accumulation - Cannabis sativa [Pathway:R-ATH-9626305] Regulatory network of nutrient accumulation - Arabidopsis thaliana [Pathway:R-SHI-9626305] Regulatory network of nutrient accumulation - Salvia hispanica [Pathway:R-SSP-9626305] Regulatory network of nutrient accumulation - Saccharum spontaneum [Pathway:R-DCA-9626305] Regulatory network of nutrient accumulation - Daucus carota [Pathway:R-OEU-9626305] Regulatory network of nutrient accumulation - Olea europaea [Pathway:R-OGU-9626305] Regulatory network of nutrient accumulation - Oryza glumaepatula [Pathway:R-NAT-9626305] Regulatory network of nutrient accumulation - Nicotiana attenuata [Pathway:R-ZJA-9626305] Regulatory network of nutrient accumulation - Zoysia japonica [Pathway:R-GSU-9626305] Regulatory network of nutrient accumulation - Galdieria sulphuraria [Pathway:R-TTU-9626305] Regulatory network of nutrient accumulation - Triticum turgidum [Pathway:R-PSO-9626305] Regulatory network of nutrient accumulation - Papaver somniferum [Pathway:R-SMO-9626305] Regulatory network of nutrient accumulation - Selaginella moellendorffii [Pathway:R-PPA-9626305] Regulatory network of nutrient accumulation - Physcomitrella patens [Pathway:R-BVU-9626305] Regulatory network of nutrient accumulation - Beta vulgaris [Pathway:R-OKA-9626305] Regulatory network of nutrient accumulation - Oryza sativa aus subgroup [Pathway:R-BOL-9626305] Regulatory network of nutrient accumulation - Brassica oleracea [Pathway:R-VFA-9626305] Regulatory network of nutrient accumulation - Vicia faba var. faba [Pathway:R-CSA-9626305] Regulatory network of nutrient accumulation - Cucumis sativus [Pathway:R-OAU-9626305] Regulatory network of nutrient accumulation - Oryza australiensis [Pathway:R-ASA-9626305] Regulatory network of nutrient accumulation - Avena sativa [Pathway:R-CSI-9626305] Regulatory network of nutrient accumulation - Citrus sinensis [Pathway:R-ITR-9626305] Regulatory network of nutrient accumulation - Ipomoea triloba [Pathway:R-CML-9626305] Regulatory network of nutrient accumulation - Cucumis melo [Pathway:R-MES-9626305] Regulatory network of nutrient accumulation - Manihot esculenta [Pathway:R-ECG-9626305] Regulatory network of nutrient accumulation - Echinochloa crus-galli [Pathway:R-PTA-9626305] Regulatory network of nutrient accumulation - Pinus taeda [Pathway:R-VUN-9626305] Regulatory network of nutrient accumulation - Vigna unguiculata [Pathway:R-SPC-9626305] Regulatory network of nutrient accumulation - Synechocystis sp. PCC 6803 [Pathway:R-TDI-9626305] Regulatory network of nutrient accumulation - Triticum dicoccoides [Pathway:R-EGR-9626305] Regulatory network of nutrient accumulation - Eucalyptus grandis [Pathway:R-NCO-9626305] Regulatory network of nutrient accumulation - Nymphaea colorata [Pathway:R-LPE-9626305] Regulatory network of nutrient accumulation - Leersia perrieri [Pathway:R-ECU-9626305] Regulatory network of nutrient accumulation - Eragrostis curvula [Pathway:R-PHH-9626305] Regulatory network of nutrient accumulation - Panicum hallii var. hallii ("HAL2") [Pathway:R-RCH-9626305] Regulatory network of nutrient accumulation - Rosa chinensis [Pathway:R-VRA-9626305] Regulatory network of nutrient accumulation - Vigna radiata [Pathway:R-SIN-9626305] Regulatory network of nutrient accumulation - Sesamum indicum [Pathway:R-LAN-9626305] Regulatory network of nutrient accumulation - Lupinus angustifolius [Pathway:R-OMI-9626305] Regulatory network of nutrient accumulation - Oryza minuta [Pathway:R-ZMA-9626305] Regulatory network of nutrient accumulation - Zea mays [Pathway:R-OES-9626305] Regulatory network of nutrient accumulation - Olea europaea var. sylvestris [Pathway:R-ADU-9626305] Regulatory network of nutrient accumulation - Arachis duranensis [Pathway:R-AOF-9626305] Regulatory network of nutrient accumulation - Asparagus officinalis [Pathway:R-ZMY-9626305] Regulatory network of nutrient accumulation - Zea mays ver5 [Pathway:R-ONI-9626305] Regulatory network of nutrient accumulation - Oryza nivara [Pathway:R-MDO-9626305] Regulatory network of nutrient accumulation - Malus domestica [Pathway:R-PVE-9626305] Regulatory network of nutrient accumulation - Pistacia vera [Pathway:R-STU-9626305] Regulatory network of nutrient accumulation - Solanum tuberosum [Pathway:R-GMA-9626305] Regulatory network of nutrient accumulation - Glycine max [Pathway:R-PSA-9626305] Regulatory network of nutrient accumulation - Pisum sativum [Pathway:R-OSI-9626305] Regulatory network of nutrient accumulation - Oryza sativa Indica Group [Pathway:R-TSP-9626305] Regulatory network of nutrient accumulation - Triticum spelta subsp. spelta [Pathway:R-NNU-9626305] Regulatory network of nutrient accumulation - Nelumbo nucifera [Pathway:R-ATR-9626305] Regulatory network of nutrient accumulation - Amborella trichopoda [Pathway:R-BRA-9626305] Regulatory network of nutrient accumulation - Brassica rapa [Pathway:R-BNA-9626305] Regulatory network of nutrient accumulation - Brassica napus [Pathway:R-CME-9626305] Regulatory network of nutrient accumulation - Cyanidioschyzon merolae [Pathway:R-VVN-9626305] Regulatory network of nutrient accumulation - Vitis vinifera [Pathway:R-CQI-9626305] Regulatory network of nutrient accumulation - Chenopodium quinoa [Pathway:R-OME-9626305] Regulatory network of nutrient accumulation - Oryza meridionalis [Pathway:R-CCR-9626305] Regulatory network of nutrient accumulation - Chondrus crispus [Pathway:R-ETE-9626305] Regulatory network of nutrient accumulation - Eragrostis tef [Pathway:R-PAV-9626305] Regulatory network of nutrient accumulation - Prunus avium [Pathway:R-CCL-9626305] Regulatory network of nutrient accumulation - Citrus clementina
releaseStatus	UPDATED
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-9626305
summation	[Summation:9626414] Endosperm is the major tissue for seed reserve accumulation ...

Referrals

(hasEvent)

[Pathway:R-OSA-9623902] Seed development - Oryza sativa

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