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Crown root development

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compartment	[Compartment:7660] nucleoplasm
created	[InstanceEdit:9030610] Gupta, Parul, 2017-11-28
dbId	9030680
displayName	Crown root development
eventOf	[Pathway:R-OSA-9640032] Root structure development - Oryza sativa
hasDiagram	true
hasEvent	[Pathway:R-OSA-9675451] Crown root emergence - Oryza sativa [Pathway:R-OSA-9030676] Crown root initiation - Oryza sativa [BlackBoxEvent:R-OSA-9675324] Expression of CRL6 - Oryza sativa [BlackBoxEvent:R-OSA-9675378] Expression of IAA6 - Oryza sativa [BlackBoxEvent:R-OSA-9675440] Expression of WOX11 - Oryza sativa [BlackBoxEvent:R-OSA-9675445] Expression of IAA23 - Oryza sativa [BlackBoxEvent:R-OSA-9675456] Expression of FSM - Oryza sativa [BlackBoxEvent:R-OSA-9675398] Expression of QHB - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:9030648] OsCAND1 is required for crown root emergence in rice [LiteratureReference:9675333] The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling [LiteratureReference:9030609] The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling [LiteratureReference:9675258] Inference of the gene regulatory network acting downstream of CROWN ROOTLESS 1 in rice reveals a regulatory cascade linking genes involved in auxin signaling, crown root initiation, and root meristem specification and maintenance [LiteratureReference:9675334] CRL6, a member of the CHD protein family, is required for crown root development in rice [LiteratureReference:9675282] CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice [LiteratureReference:9675452] The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period [LiteratureReference:9030569] OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Crown root development
orthologousEvent	[Pathway:R-OAU-9030680] Crown root development - Oryza australiensis [Pathway:R-VUN-9030680] Crown root development - Vigna unguiculata [Pathway:R-VAN-9030680] Crown root development - Vigna angularis [Pathway:R-CAR-9030680] Crown root development - Cicer arietinum [Pathway:R-CCP-9030680] Crown root development - Corchorus capsularis [Pathway:R-BDI-9030680] Crown root development - Brachypodium distachyon [Pathway:R-ALY-9030680] Crown root development - Arabidopsis lyrata [Pathway:R-AIP-9030680] Crown root development - Arachis ipaensis [Pathway:R-LPE-9030680] Crown root development - Leersia perrieri [Pathway:R-HAN-9030680] Crown root development - Helianthus annuus [Pathway:R-CCN-9030680] Crown root development - Coffea canephora [Pathway:R-ZMY-9030680] Crown root development - Zea mays ver5 [Pathway:R-CSI-9030680] Crown root development - Citrus sinensis [Pathway:R-LPR-9030680] Crown root development - Lolium perenne [Pathway:R-VVN-9030680] Crown root development - Vitis vinifera [Pathway:R-ASA-9030680] Crown root development - Avena sativa [Pathway:R-PTA-9030680] Crown root development - Pinus taeda [Pathway:R-SIT-9030680] Crown root development - Setaria italica [Pathway:R-PSO-9030680] Crown root development - Papaver somniferum [Pathway:R-CAN-9030680] Crown root development - Capsicum annuum [Pathway:R-ATA-9030680] Crown root development - Aegilops tauschii [Pathway:R-JRE-9030680] Crown root development - Juglans regia [Pathway:R-TUR-9030680] Crown root development - Triticum urartu [Pathway:R-ACH-9030680] Crown root development - Actinidia chinensis [Pathway:R-AUM-9030680] Crown root development - Aegilops umbellulata [Pathway:R-OPU-9030680] Crown root development - Oryza punctata [Pathway:R-PHA-9030680] Crown root development - Panicum hallii ("FIL2") [Pathway:R-OEU-9030680] Crown root development - Olea europaea [Pathway:R-OMI-9030680] Crown root development - Oryza minuta [Pathway:R-BVU-9030680] Crown root development - Beta vulgaris [Pathway:R-LAN-9030680] Crown root development - Lupinus angustifolius [Pathway:R-FCR-9030680] Crown root development - Ficus carica [Pathway:R-DRO-9030680] Crown root development - Dioscorea rotundata [Pathway:R-ECU-9030680] Crown root development - Eragrostis curvula [Pathway:R-QSU-9030680] Crown root development - Quercus suber [Pathway:R-FVE-9030680] Crown root development - Fragaria vesca [Pathway:R-ETE-9030680] Crown root development - Eragrostis tef [Pathway:R-CSC-9030680] Crown root development - Cannabis sativa [Pathway:R-PPE-9030680] Crown root development - Prunus persica [Pathway:R-AHY-9030680] Crown root development - Arachis hypogaea [Pathway:R-OGU-9030680] Crown root development - Oryza glumaepatula [Pathway:R-ONI-9030680] Crown root development - Oryza nivara [Pathway:R-OSI-9030680] Crown root development - Oryza sativa Indica Group [Pathway:R-SCR-9030680] Crown root development - Secale cereale [Pathway:R-CST-9030680] Crown root development - Camelina sativa [Pathway:R-TSP-9030680] Crown root development - Triticum spelta subsp. spelta [Pathway:R-PAV-9030680] Crown root development - Prunus avium [Pathway:R-OGL-9030680] Crown root development - Oryza glaberrima [Pathway:R-SVI-9030680] Crown root development - Setaria viridis [Pathway:R-PVE-9030680] Crown root development - Pistacia vera [Pathway:R-VRA-9030680] Crown root development - Vigna radiata [Pathway:R-ZJA-9030680] Crown root development - Zoysia japonica [Pathway:R-OES-9030680] Crown root development - Olea europaea var. sylvestris [Pathway:R-JCU-9030680] Crown root development - Jatropha curcas [Pathway:R-STU-9030680] Crown root development - Solanum tuberosum [Pathway:R-CQI-9030680] Crown root development - Chenopodium quinoa [Pathway:R-BJU-9030680] Crown root development - Brassica juncea [Pathway:R-CSK-9030680] Crown root development - Cannabis sativa subsp. indica [Pathway:R-OLO-9030680] Crown root development - Oryza longistaminata [Pathway:R-NAT-9030680] Crown root development - Nicotiana attenuata [Pathway:R-MAC-9030680] Crown root development - Musa acuminata [Pathway:R-BNA-9030680] Crown root development - Brassica napus [Pathway:R-NNU-9030680] Crown root development - Nelumbo nucifera [Pathway:R-TCA-9030680] Crown root development - Theobroma cacao [Pathway:R-OBA-9030680] Crown root development - Oryza barthii [Pathway:R-RCH-9030680] Crown root development - Rosa chinensis [Pathway:R-GRA-9030680] Crown root development - Gossypium raimondii [Pathway:R-ATH-9030680] Crown root development - Arabidopsis thaliana [Pathway:R-MES-9030680] Crown root development - Manihot esculenta [Pathway:R-PSA-9030680] Crown root development - Pisum sativum [Pathway:R-TPR-9030680] Crown root development - Trifolium pratense [Pathway:R-PHH-9030680] Crown root development - Panicum hallii var. hallii ("HAL2") [Pathway:R-CCL-9030680] Crown root development - Citrus clementina [Pathway:R-ITR-9030680] Crown root development - Ipomoea triloba [Pathway:R-CML-9030680] Crown root development - Cucumis melo [Pathway:R-AOF-9030680] Crown root development - Asparagus officinalis [Pathway:R-HLP-9030680] Crown root development - Humulus lupulus var. lupulus [Pathway:R-CRU-9030680] Crown root development - Capsella rubella [Pathway:R-TTI-9030680] Crown root development - Triticum timopheevii subsp. timopheevii [Pathway:R-GMA-9030680] Crown root development - Glycine max [Pathway:R-SMO-9030680] Crown root development - Selaginella moellendorffii [Pathway:R-CCI-9030680] Crown root development - Corymbia citriodora [Pathway:R-ZMA-9030680] Crown root development - Zea mays [Pathway:R-PED-9030680] Crown root development - Phyllostachys edulis [Pathway:R-FEX-9030680] Crown root development - Fraxinus excelsior (European ash) [Pathway:R-HVU-9030680] Crown root development - Hordeum vulgare [Pathway:R-VFA-9030680] Crown root development - Vicia faba var. faba [Pathway:R-BOL-9030680] Crown root development - Brassica oleracea [Pathway:R-CCD-9030680] Crown root development - Cynara cardunculus var. scolymus [Pathway:R-MGU-9030680] Crown root development - Erythranthe guttata [Pathway:R-PTI-9030680] Crown root development - Populus trichocarpa [Pathway:R-OGR-9030680] Crown root development - Oryza meyeriana var. granulata [Pathway:R-EGR-9030680] Crown root development - Eucalyptus grandis [Pathway:R-OOF-9030680] Crown root development - Oryza officinalis [Pathway:R-NCO-9030680] Crown root development - Nymphaea colorata [Pathway:R-ACO-9030680] Crown root development - Ananas comosus [Pathway:R-AHA-9030680] Crown root development - Arabidopsis halleri [Pathway:R-SHI-9030680] Crown root development - Salvia hispanica [Pathway:R-LST-9030680] Crown root development - Lathyrus sativus [Pathway:R-DCA-9030680] Crown root development - Daucus carota [Pathway:R-QLO-9030680] Crown root development - Quercus lobata [Pathway:R-CSA-9030680] Crown root development - Cucumis sativus [Pathway:R-ORU-9030680] Crown root development - Oryza rufipogon [Pathway:R-ECG-9030680] Crown root development - Echinochloa crus-galli [Pathway:R-MTR-9030680] Crown root development - Medicago truncatula [Pathway:R-BRA-9030680] Crown root development - Brassica rapa [Pathway:R-COL-9030680] Crown root development - Corchorus olitorius [Pathway:R-OBR-9030680] Crown root development - Oryza brachyantha [Pathway:R-CCA-9030680] Crown root development - Cajanus cajan [Pathway:R-GSO-9030680] Crown root development - Glycine soja [Pathway:R-ATR-9030680] Crown root development - Amborella trichopoda [Pathway:R-SSP-9030680] Crown root development - Saccharum spontaneum [Pathway:R-TTU-9030680] Crown root development - Triticum turgidum [Pathway:R-DEX-9030680] Crown root development - Digitaria exilis [Pathway:R-MDO-9030680] Crown root development - Malus domestica [Pathway:R-MPO-9030680] Crown root development - Marchantia polymorpha [Pathway:R-OME-9030680] Crown root development - Oryza meridionalis [Pathway:R-PVU-9030680] Crown root development - Phaseolus vulgaris [Pathway:R-SIN-9030680] Crown root development - Sesamum indicum [Pathway:R-PAB-9030680] Crown root development - Picea abies [Pathway:R-PDA-9030680] Crown root development - Phoenix dactylifera [Pathway:R-TAE-9030680] Crown root development - Triticum aestivum [Pathway:R-SBI-9030680] Crown root development - Sorghum bicolor [Pathway:R-CLA-9030680] Crown root development - Citrullus lanatus [Pathway:R-TDI-9030680] Crown root development - Triticum dicoccoides [Pathway:R-LSA-9030680] Crown root development - Lactuca sativa [Pathway:R-SLY-9030680] Crown root development - Solanum lycopersicum [Pathway:R-ADU-9030680] Crown root development - Arachis duranensis
revised	[InstanceEdit:9659485] Gupta, Parul, 2019-08-27
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-9030680
summation	[Summation:9675410] In rice, the crown root primordium originates from the inner...

Referrals

(hasEvent)

[Pathway:R-OSA-9640032] Root structure development - Oryza sativa

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