Shoot (tiller) formation and regulation of tiller angle

Stable Identifier
R-OSA-9924451
Type
Pathway
Species
Oryza sativa
Locations in the PathwayBrowser
Summation

Tillers are specialized panicle-bearing branches of cereal crops (e.g., rice). The tiller in rice determines plant architecture and grain yield: extreme-spreading plants with prostrate growth occupy too much space, whereas extremely compact rice plants are easily susceptible to diseases. Thus, an optimum tiller angle is a desirable agronomic trait for high-density planting to maximize grain yield (Wang and Li, 2022). Tillers originate from axillary buds that develop at the axil of every leaf. As the seedling develops, the leaf primordium of the mother stem differentiates at the shoot apical meristem, and an axillary bud differentiates opposite to it (at 180°). The axillary bud consists of an axillary meristem, a few leaf primordia, and a prophyll. The axillary bud remains dormant (due to apical bud dominance); however, outgrowth begins once apical dominance is released. The first leaf derived from the axillary bud emerges from the subtending leaf sheath of the mother stem, and the bud develops as a tiller. Primary tillers refer to those that originate directly from the main stem, while secondary tillers arise from the primary tillers, and tertiary tillers develop from the secondary tillers. Tiller formation involves several genes associated with plant growth and development, hormone signaling, phototropism, and gravitropism, which shape the overall shoot architecture. The genetic basis of the tiller angle is diverse between rice cultivars and ancestral species. In different regions of the world, compact plant phenotype was selected during the historical process of crop domestication that led to the development of rice cultivars with smaller tiller angles than their ancestral wild relatives. TAC3, D2, and TAC1 have been subjected to selection during the domestication of Asian cultivated rice, and in African rice, the prostrate-to-erect transition occurred due to the selection of the prog7 allele (Dong et al., 2016). However, the prog1 allele controls prostrate growth in wild rice. Functional genomic or mutant studies have identified several other genes involved in gravitropic response, including LAZY1. The lazy1 mutant shows a wider tiller angle and a prostrate growth phenotype. Using a manual biocuration approach, we have synthesized gene interaction networks associated with shoot gravitropism. The evidence of each reaction and associated information is provided in reaction summations. (Note: Dicots, such as Arabidopsis, do not have tillers; instead, they have rosette branches and cauline branches, which arise from leaf axils of the inflorescence stem. However, some of the genes involved in shoot gravitropism are conserved among higher plants).

Literature References
PubMed ID Title Journal Year
24616269 DWARF3 participates in an SCF complex and associates with DWARF14 to suppress rice shoot branching Plant Cell Physiol 2014
37621089 Rice domestication-associated transcription factor PROSTRATE GROWTH 1 controls plant and panicle architecture by regulating the expression of LAZY 1 and OsGIGANTEA, respectively Mol Plant 2023
37299125 Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (Oryza sativa) Plants (Basel) 2023
19258439 The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice Plant Cell 2009
26265761 Conserved Gene Expression Programs in Developing Roots from Diverse Plants Plant Cell 2015
26443376 Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle Plant Cell Physiol 2015
22570626 Dynamics of brassinosteroid response modulated by negative regulator LIC in rice PLoS Genet. 2012
23463009 The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14 Nat Commun 2013
25028496 Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis Proc Natl Acad Sci U S A 2014
31416828 The Rice Actin-Binding Protein RMD Regulates Light-Dependent Shoot Gravitropism Plant Physiol 2019
24170127 Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture Plant Cell 2013
20547591 FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice Plant Cell Physiol. 2010
28555145 RNA-Seq Analysis of Diverse Rice Genotypes to Identify the Genes Controlling Coleoptile Growth during Submerged Germination Front Plant Sci 2017
38589963 Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants Mol Hortic 2024
10476078 Dimerization and DNA binding of auxin response factors Plant J 1999
12581309 The OsTB1 gene negatively regulates lateral branching in rice Plant J. 2003
23124325 Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice Plant Physiol 2013
33067639 LAZY1 Controls Tiller Angle and Shoot Gravitropism by Regulating the Expression of Auxin Transporters and Signaling Factors in Rice Plant Cell Physiol 2021
30927053 Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice Planta 2019
34896639 Molecular basis underlying rice tiller angle: Current progress and future perspectives Mol Plant 2022
24667992 Brassinosteroid-mediated regulation of agronomic traits in rice Plant Cell Rep. 2014
31200078 OsBRXL4 Regulates Shoot Gravitropism and Rice Tiller Angle through Affecting LAZY1 Nuclear Localization Mol Plant 2019
17412736 Identification of the gravitropism-related rice gene LAZY1 and elucidation of LAZY1-dependent and -independent gravity signaling pathways Plant Cell Physiol 2007
17468779 LAZY1 controls rice shoot gravitropism through regulating polar auxin transport Cell Res 2007
19700562 SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice Plant Physiol 2009
17900969 Auxin response factors Curr Opin Plant Biol 2007
17908158 TAC1, a major quantitative trait locus controlling tiller angle in rice Plant J 2007
29915152 A Core Regulatory Pathway Controlling Rice Tiller Angle Mediated by the LAZY1-Dependent Asymmetric Distribution of Auxin Plant Cell 2018
18953406 OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling PLoS One 2008
32913047 OsHOX1 and OsHOX28 Redundantly Shape Rice Tiller Angle by Reducing HSFA2D Expression and Auxin Content Plant Physiol 2020
31002981 Natural Variations at TIG1 Encoding a TCP Transcription Factor Contribute to Plant Architecture Domestication in Rice Mol Plant 2019
27814357 A Novel Tiller Angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of Tiller Angle in Rice Cultivars PLoS Genet 2016
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