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Regulation of seed size

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authored	[InstanceEdit:9031644] Gupta, Parul, 2017-12-01
compartment	[Compartment:7660] nucleoplasm [Compartment:70101] cytosol [Compartment:1222574] cell wall
created	[InstanceEdit:9035635] Gupta, Parul, 2018-01-24
dbId	9035605
displayName	Regulation of seed size
eventOf	[Pathway:R-OSA-9623902] Seed development - Oryza sativa
hasDiagram	true
hasEvent	[Pathway:R-OSA-5632095] Brassinosteroid signaling - Oryza sativa [BlackBoxEvent:R-OSA-9035709] Translation of LAC13 - Oryza sativa [Pathway:R-OSA-9035691] Regulation of seed width - Oryza sativa [BlackBoxEvent:R-OSA-9035809] Translation of GRF4 - Oryza sativa [Reaction:R-OSA-9035815] GRF4 and GIF1 (Transcription factor:coactivator) complex formation - Oryza sativa [Pathway:R-OSA-9035721] Regulation of seed length - Oryza sativa [Pathway:R-OSA-9035748] Regulation of seed thickness - Oryza sativa [Pathway:R-OSA-9035568] Panicle branching - Oryza sativa [BlackBoxEvent:R-OSA-9035674] Translation of SPL13 - Oryza sativa [BlackBoxEvent:R-OSA-9035752] Transcription of SRS5 - Oryza sativa [BlackBoxEvent:R-OSA-9035819] Translation of SPL14 - Oryza sativa [BlackBoxEvent:R-OSA-9035619] Localization of GRF4 - Oryza sativa [BlackBoxEvent:R-OSA-9035735] Localization of SPL13 - Oryza sativa [BlackBoxEvent:R-OSA-9035591] Localization of SPL14 - Oryza sativa [BlackBoxEvent:R-OSA-9035805] Transcription of GW7 - Oryza sativa [BlackBoxEvent:R-OSA-9035698] Localization of SPL16 - Oryza sativa [BlackBoxEvent:R-OSA-9035812] Translation of SPL16 - Oryza sativa [BlackBoxEvent:R-OSA-9035754] Translation of GRF6 - Oryza sativa [BlackBoxEvent:R-OSA-9035832] Localization of GRF6 - Oryza sativa [BlackBoxEvent:R-OSA-9035602] Transcription of MADS34 - Oryza sativa [BlackBoxEvent:R-OSA-9035610] Transcription of TAW1 - Oryza sativa [BlackBoxEvent:R-OSA-9035577] Transcription of ARF11 - Oryza sativa [BlackBoxEvent:R-OSA-9035612] Transcription of ARF2 - Oryza sativa [BlackBoxEvent:R-OSA-9035664] Transcription of ARF7 - Oryza sativa [Pathway:R-OSA-5608118] Auxin signalling - Oryza sativa [BlackBoxEvent:R-OSA-9030945] Transcription of TB1 - Oryza sativa [BlackBoxEvent:R-OSA-9030933] Transcription of DEP1 - Oryza sativa [BlackBoxEvent:R-OSA-9622254] Transcription of GW2 - Oryza sativa [Reaction:R-OSA-9622311] BRI1:BAK1 complex formation - Oryza sativa [Reaction:R-OSA-9622212] DEP1:RGB1 complex formation - Oryza sativa [Reaction:R-OSA-9622227] GGC2:RGB1 complex formation - Oryza sativa [BlackBoxEvent:R-OSA-9622249] Transcription of GS3 - Oryza sativa [BlackBoxEvent:R-OSA-9622275] Transcription of GS5 - Oryza sativa [BlackBoxEvent:R-OSA-9622278] Transcription of SPL16 - Oryza sativa [BlackBoxEvent:R-OSA-9630669] Expression of FLO2 - Oryza sativa [BlackBoxEvent:R-OSA-9630664] Expression of GIF1 - Oryza sativa [BlackBoxEvent:R-OSA-9630663] Expression of GW5 - Oryza sativa [BlackBoxEvent:R-OSA-9630668] Expression of WRKY78 - Oryza sativa [BlackBoxEvent:R-OSA-9630661] Formation of RGB1-GS3 complex - Oryza sativa [BlackBoxEvent:R-OSA-9630672] Translation of GW2 - Oryza sativa [BlackBoxEvent:R-OSA-9630670] Translation of GW7 - Oryza sativa [BlackBoxEvent:R-OSA-9630667] Translation of SRS5 - Oryza sativa [BlackBoxEvent:R-OSA-9630658] Translation of TAW1 - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:9035586] Blocking miR396 increases rice yield by shaping inflorescence architecture [LiteratureReference:9035580] MicroRNAs in crop improvement: fine-tuners for complex traits [LiteratureReference:9035794] Copy number variation at the GL7 locus contributes to grain size diversity in rice [LiteratureReference:9035548] FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice [LiteratureReference:9035774] Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions [LiteratureReference:5608211] Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa) [LiteratureReference:9030877] Genome-wide binding analysis of the transcription activator ideal plant architecture1 reveals a complex network regulating rice plant architecture [LiteratureReference:9035716] Natural Variations in SLG7 Regulate Grain Shape in Rice [LiteratureReference:9035535] Natural variation at the DEP1 locus enhances grain yield in rice [LiteratureReference:9035606] OsGRF4 controls grain shape, panicle length and seed shattering in rice [LiteratureReference:9035537] OsSPL14 promotes panicle branching and higher grain productivity in rice [LiteratureReference:9035780] Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching [LiteratureReference:9035668] Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice [LiteratureReference:9030974] Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice [LiteratureReference:9035663] Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice [LiteratureReference:9035661] TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition [LiteratureReference:9035834] The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality [LiteratureReference:9035541] The OsTB1 gene negatively regulates lateral branching in rice [LiteratureReference:9035590] The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice [LiteratureReference:9035712] The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development [LiteratureReference:9035670] PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice [LiteratureReference:9622225] A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase [LiteratureReference:9622179] A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality [LiteratureReference:9622169] Control of grain size, shape and quality by OsSPL16 in rice [LiteratureReference:9622208] Control of rice grain-filling and yield by a gene with a potential signature of domestication [LiteratureReference:9622266] Deletion in a gene associated with grain size increased yields during rice domestication [LiteratureReference:9622173] Differential expression of GS5 regulates grain size in rice [LiteratureReference:9622194] GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein [LiteratureReference:9622231] GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice [LiteratureReference:9622198] Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight [LiteratureReference:9622221] Linking differential domain functions of the GS3 protein to natural variation of grain size in rice [LiteratureReference:9622151] Natural variation in GS5 plays an important role in regulating grain size and yield in rice [LiteratureReference:9609028] Regulatory Role ofin the Determination of Glumes Fate, Grain Yield, and Quality in Rice [LiteratureReference:9622196] Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice [LiteratureReference:9622287] The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice [LiteratureReference:9622155] A G-protein pathway determines grain size in rice [LiteratureReference:9622181] Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice [LiteratureReference:9622272] Suppression of the rice heterotrimeric G protein ?-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions [LiteratureReference:9622263] Seed size is determined by the combinations of the genes controlling different seed characteristics in rice [LiteratureReference:9622242] Functional genomics based understanding of rice endosperm development
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Regulation of seed size
orthologousEvent	[Pathway:R-ECU-9035605] Regulation of seed size - Eragrostis curvula [Pathway:R-LPE-9035605] Regulation of seed size - Leersia perrieri [Pathway:R-OPU-9035605] Regulation of seed size - Oryza punctata [Pathway:R-CCL-9035605] Regulation of seed size - Citrus clementina [Pathway:R-ZMY-9035605] Regulation of seed size - Zea mays ver5 [Pathway:R-MES-9035605] Regulation of seed size - Manihot esculenta [Pathway:R-SSP-9035605] Regulation of seed size - Saccharum spontaneum [Pathway:R-PTI-9035605] Regulation of seed size - Populus trichocarpa [Pathway:R-OBA-9035605] Regulation of seed size - Oryza barthii [Pathway:R-OME-9035605] Regulation of seed size - Oryza meridionalis [Pathway:R-GRA-9035605] Regulation of seed size - Gossypium raimondii [Pathway:R-HAN-9035605] Regulation of seed size - Helianthus annuus [Pathway:R-BDI-9035605] Regulation of seed size - Brachypodium distachyon [Pathway:R-ATA-9035605] Regulation of seed size - Aegilops tauschii [Pathway:R-TDI-9035605] Regulation of seed size - Triticum dicoccoides [Pathway:R-NNU-9035605] Regulation of seed size - Nelumbo nucifera [Pathway:R-FEX-9035605] Regulation of seed size - Fraxinus excelsior (European ash) [Pathway:R-EGR-9035605] Regulation of seed size - Eucalyptus grandis [Pathway:R-GSU-9035605] Regulation of seed size - Galdieria sulphuraria [Pathway:R-AHA-9035605] Regulation of seed size - Arabidopsis halleri [Pathway:R-BNA-9035605] Regulation of seed size - Brassica napus [Pathway:R-MTR-9035605] Regulation of seed size - Medicago truncatula [Pathway:R-NCO-9035605] Regulation of seed size - Nymphaea colorata [Pathway:R-PSO-9035605] Regulation of seed size - Papaver somniferum [Pathway:R-OMI-9035605] Regulation of seed size - Oryza minuta [Pathway:R-GMA-9035605] Regulation of seed size - Glycine max [Pathway:R-OEU-9035605] Regulation of seed size - Olea europaea [Pathway:R-CCD-9035605] Regulation of seed size - Cynara cardunculus var. scolymus [Pathway:R-MPO-9035605] Regulation of seed size - Marchantia polymorpha [Pathway:R-MAC-9035605] Regulation of seed size - Musa acuminata [Pathway:R-HVU-9035605] Regulation of seed size - Hordeum vulgare [Pathway:R-AUM-9035605] Regulation of seed size - Aegilops umbellulata [Pathway:R-HLP-9035605] Regulation of seed size - Humulus lupulus var. lupulus [Pathway:R-ALY-9035605] Regulation of seed size - Arabidopsis lyrata [Pathway:R-AIP-9035605] Regulation of seed size - Arachis ipaensis [Pathway:R-CCP-9035605] Regulation of seed size - Corchorus capsularis [Pathway:R-SIT-9035605] Regulation of seed size - Setaria italica [Pathway:R-BRA-9035605] Regulation of seed size - Brassica rapa [Pathway:R-CRU-9035605] Regulation of seed size - Capsella rubella [Pathway:R-PPE-9035605] Regulation of seed size - Prunus persica [Pathway:R-OOF-9035605] Regulation of seed size - Oryza officinalis [Pathway:R-ONI-9035605] Regulation of seed size - Oryza nivara [Pathway:R-MGU-9035605] Regulation of seed size - Erythranthe guttata [Pathway:R-OLU-9035605] Regulation of seed size - Ostreococcus lucimarinus [Pathway:R-CLA-9035605] Regulation of seed size - Citrullus lanatus [Pathway:R-AHY-9035605] Regulation of seed size - Arachis hypogaea [Pathway:R-PAB-9035605] Regulation of seed size - Picea abies [Pathway:R-DRO-9035605] Regulation of seed size - Dioscorea rotundata [Pathway:R-PED-9035605] Regulation of seed size - Phyllostachys edulis [Pathway:R-ADU-9035605] Regulation of seed size - Arachis duranensis [Pathway:R-TCA-9035605] Regulation of seed size - Theobroma cacao [Pathway:R-VFA-9035605] Regulation of seed size - Vicia faba var. faba [Pathway:R-ECG-9035605] Regulation of seed size - Echinochloa crus-galli [Pathway:R-ORU-9035605] Regulation of seed size - Oryza rufipogon [Pathway:R-LSA-9035605] Regulation of seed size - Lactuca sativa [Pathway:R-CAN-9035605] Regulation of seed size - Capsicum annuum [Pathway:R-NAT-9035605] Regulation of seed size - Nicotiana attenuata [Pathway:R-OKA-9035605] Regulation of seed size - Oryza sativa aus subgroup [Pathway:R-ZJA-9035605] Regulation of seed size - Zoysia japonica [Pathway:R-CSA-9035605] Regulation of seed size - Cucumis sativus [Pathway:R-CME-9035605] Regulation of seed size - Cyanidioschyzon merolae [Pathway:R-BOL-9035605] Regulation of seed size - Brassica oleracea [Pathway:R-SMO-9035605] Regulation of seed size - Selaginella moellendorffii [Pathway:R-PHA-9035605] Regulation of seed size - Panicum hallii ("FIL2") [Pathway:R-ITR-9035605] Regulation of seed size - Ipomoea triloba [Pathway:R-CCN-9035605] Regulation of seed size - Coffea canephora [Pathway:R-OGL-9035605] Regulation of seed size - Oryza glaberrima [Pathway:R-SCR-9035605] Regulation of seed size - Secale cereale [Pathway:R-VAN-9035605] Regulation of seed size - Vigna angularis [Pathway:R-CCR-9035605] Regulation of seed size - Chondrus crispus [Pathway:R-PHH-9035605] Regulation of seed size - Panicum hallii var. hallii ("HAL2") [Pathway:R-TTI-9035605] Regulation of seed size - Triticum timopheevii subsp. timopheevii [Pathway:R-RCH-9035605] Regulation of seed size - Rosa chinensis [Pathway:R-VUN-9035605] Regulation of seed size - Vigna unguiculata [Pathway:R-OAU-9035605] Regulation of seed size - Oryza australiensis [Pathway:R-QSU-9035605] Regulation of seed size - Quercus suber [Pathway:R-SIN-9035605] Regulation of seed size - Sesamum indicum [Pathway:R-PSA-9035605] Regulation of seed size - Pisum sativum [Pathway:R-BVU-9035605] Regulation of seed size - Beta vulgaris [Pathway:R-ACO-9035605] Regulation of seed size - Ananas comosus [Pathway:R-TPR-9035605] Regulation of seed size - Trifolium pratense [Pathway:R-CAR-9035605] Regulation of seed size - Cicer arietinum [Pathway:R-CBA-9035605] Regulation of seed size - Chara braunii [Pathway:R-PVU-9035605] Regulation of seed size - Phaseolus vulgaris [Pathway:R-ATR-9035605] Regulation of seed size - Amborella trichopoda [Pathway:R-PDA-9035605] Regulation of seed size - Phoenix dactylifera [Pathway:R-PVE-9035605] Regulation of seed size - Pistacia vera [Pathway:R-TUR-9035605] Regulation of seed size - Triticum urartu [Pathway:R-LAN-9035605] Regulation of seed size - Lupinus angustifolius [Pathway:R-STU-9035605] Regulation of seed size - Solanum tuberosum [Pathway:R-DEX-9035605] Regulation of seed size - Digitaria exilis [Pathway:R-JCU-9035605] Regulation of seed size - Jatropha curcas [Pathway:R-OLO-9035605] Regulation of seed size - Oryza longistaminata [Pathway:R-OGR-9035605] Regulation of seed size - Oryza meyeriana var. granulata [Pathway:R-AOF-9035605] Regulation of seed size - Asparagus officinalis [Pathway:R-ZMA-9035605] Regulation of seed size - Zea mays [Pathway:R-BJU-9035605] Regulation of seed size - Brassica juncea [Pathway:R-CSK-9035605] Regulation of seed size - Cannabis sativa subsp. indica [Pathway:R-VVN-9035605] Regulation of seed size - Vitis vinifera [Pathway:R-OES-9035605] Regulation of seed size - Olea europaea var. sylvestris [Pathway:R-CST-9035605] Regulation of seed size - Camelina sativa [Pathway:R-ETE-9035605] Regulation of seed size - Eragrostis tef [Pathway:R-LPR-9035605] Regulation of seed size - Lolium perenne [Pathway:R-PAV-9035605] Regulation of seed size - Prunus avium [Pathway:R-PTA-9035605] Regulation of seed size - Pinus taeda [Pathway:R-FVE-9035605] Regulation of seed size - Fragaria vesca [Pathway:R-SVI-9035605] Regulation of seed size - Setaria viridis [Pathway:R-SHI-9035605] Regulation of seed size - Salvia hispanica [Pathway:R-TSP-9035605] Regulation of seed size - Triticum spelta subsp. spelta [Pathway:R-MDO-9035605] Regulation of seed size - Malus domestica [Pathway:R-COL-9035605] Regulation of seed size - Corchorus olitorius [Pathway:R-LST-9035605] Regulation of seed size - Lathyrus sativus [Pathway:R-TAE-9035605] Regulation of seed size - Triticum aestivum [Pathway:R-OSI-9035605] Regulation of seed size - Oryza sativa Indica Group [Pathway:R-QLO-9035605] Regulation of seed size - Quercus lobata [Pathway:R-CSC-9035605] Regulation of seed size - Cannabis sativa [Pathway:R-OGU-9035605] Regulation of seed size - Oryza glumaepatula [Pathway:R-CRE-9035605] Regulation of seed size - Chlamydomonas reinhardtii [Pathway:R-HLH-9035605] Regulation of seed size - Humulus lupulus [Pathway:R-TTU-9035605] Regulation of seed size - Triticum turgidum [Pathway:R-DCA-9035605] Regulation of seed size - Daucus carota [Pathway:R-CQI-9035605] Regulation of seed size - Chenopodium quinoa [Pathway:R-ATH-9035605] Regulation of seed size - Arabidopsis thaliana [Pathway:R-VRA-9035605] Regulation of seed size - Vigna radiata [Pathway:R-CCI-9035605] Regulation of seed size - Corymbia citriodora [Pathway:R-CCA-9035605] Regulation of seed size - Cajanus cajan [Pathway:R-SBI-9035605] Regulation of seed size - Sorghum bicolor [Pathway:R-FCR-9035605] Regulation of seed size - Ficus carica [Pathway:R-JRE-9035605] Regulation of seed size - Juglans regia [Pathway:R-ACH-9035605] Regulation of seed size - Actinidia chinensis [Pathway:R-SLY-9035605] Regulation of seed size - Solanum lycopersicum [Pathway:R-GSO-9035605] Regulation of seed size - Glycine soja [Pathway:R-CML-9035605] Regulation of seed size - Cucumis melo [Pathway:R-CSI-9035605] Regulation of seed size - Citrus sinensis [Pathway:R-ASA-9035605] Regulation of seed size - Avena sativa [Pathway:R-PPA-9035605] Regulation of seed size - Physcomitrella patens [Pathway:R-OBR-9035605] Regulation of seed size - Oryza brachyantha
revised	[InstanceEdit:9611918] Gupta, Parul, 2018-06-21
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-9035605
summation	[Summation:9035783] Rice endosperm occupies most of the space in rice seed. Many...

Referrals

(hasEvent)

[Pathway:R-OSA-9623902] Seed development - Oryza sativa

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