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Auxin signalling

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authored	[InstanceEdit:5608150] Dharmawardhana, DP, 2014-07-14
created	[InstanceEdit:5608168] Amarasinghe, Vindhya, 2014-07-15
dbId	5608118
displayName	Auxin signalling
edited	[InstanceEdit:5608086] Amarasinghe, Vindhya, 2014-07-14
eventOf	[Pathway:R-OSA-2744341] Hormone signaling, transport, and metabolism - Oryza sativa [Pathway:R-OSA-9035605] Regulation of seed size - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:4382] auxin-activated signaling pathway
hasDiagram	true
hasEvent	[BlackBoxEvent:R-OSA-5608217] IAA/ABP release - Oryza sativa [Reaction:R-OSA-5608208] ARF inactivation by AUX/IAA - Oryza sativa [Reaction:R-OSA-5608193] IAA efflux - Oryza sativa [BlackBoxEvent:R-OSA-5608175] IAA efflux into nucleus - Oryza sativa [Reaction:R-OSA-5608156] IAA/ABP1 - Oryza sativa [Reaction:R-OSA-5608134] IAA/ABP1/SKU5_CBP1 - Oryza sativa [Reaction:R-OSA-5608214] RIC activation - Oryza sativa [Reaction:R-OSA-5608171] ROP activation - Oryza sativa [Reaction:R-OSA-5608104] TIRI-IAA-AUX/IAA interaction (Auxin binds TIR1 and Aux/IAA) - Oryza sativa [BlackBoxEvent:R-OSA-5608153] Transcription of Auxin response genes - Oryza sativa [BlackBoxEvent:R-OSA-5608177] Ubiquitination and degradation of AUX/IAA - Oryza sativa [Reaction:R-OSA-5679295] Clathrin-mediated endocytosis of PIN protein - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:5608115] Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression [LiteratureReference:5608144] From perception to attenuation: auxin signalling and responses [LiteratureReference:5608181] Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones [LiteratureReference:5608211] Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa) [LiteratureReference:5608202] OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice [LiteratureReference:5608112] Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa) [LiteratureReference:5679315] Auxin binding protein 1 (ABP1) is not required for either auxin signaling or Arabidopsis development [LiteratureReference:5679338] Cell surface ABP1-TMK auxin-sensing complex activates ROP GTPase signaling [LiteratureReference:5679335] Novel ABP1-TMK auxin sensing system controls ROP GTPase-mediated interdigitated cell expansion in Arabidopsis [LiteratureReference:5679345] Rho-GTPase-regulated vesicle trafficking in plant cell polarity [LiteratureReference:5679346] The PIN-FORMED (PIN) protein family of auxin transporters
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Auxin signalling
orthologousEvent	[Pathway:R-CML-5608118] Auxin signalling - Cucumis melo [Pathway:R-CRU-5608118] Auxin signalling - Capsella rubella [Pathway:R-BDI-5608118] Auxin signalling - Brachypodium distachyon [Pathway:R-CCN-5608118] Auxin signalling - Coffea canephora [Pathway:R-EGR-5608118] Auxin signalling - Eucalyptus grandis [Pathway:R-AIP-5608118] Auxin signalling - Arachis ipaensis [Pathway:R-HLP-5608118] Auxin signalling - Humulus lupulus var. lupulus [Pathway:R-HAN-5608118] Auxin signalling - Helianthus annuus [Pathway:R-MES-5608118] Auxin signalling - Manihot esculenta [Pathway:R-ITR-5608118] Auxin signalling - Ipomoea triloba [Pathway:R-CSI-5608118] Auxin signalling - Citrus sinensis [Pathway:R-PED-5608118] Auxin signalling - Phyllostachys edulis [Pathway:R-TDI-5608118] Auxin signalling - Triticum dicoccoides [Pathway:R-LPE-5608118] Auxin signalling - Leersia perrieri [Pathway:R-ECU-5608118] Auxin signalling - Eragrostis curvula [Pathway:R-CCA-5608118] Auxin signalling - Cajanus cajan [Pathway:R-OMI-5608118] Auxin signalling - Oryza minuta [Pathway:R-AHA-5608118] Auxin signalling - Arabidopsis halleri [Pathway:R-GSU-5608118] Auxin signalling - Galdieria sulphuraria [Pathway:R-NCO-5608118] Auxin signalling - Nymphaea colorata [Pathway:R-PAB-5608118] Auxin signalling - Picea abies [Pathway:R-GRA-5608118] Auxin signalling - Gossypium raimondii [Pathway:R-ATA-5608118] Auxin signalling - Aegilops tauschii [Pathway:R-PHA-5608118] Auxin signalling - Panicum hallii ("FIL2") [Pathway:R-NAT-5608118] Auxin signalling - Nicotiana attenuata [Pathway:R-PTI-5608118] Auxin signalling - Populus trichocarpa [Pathway:R-MGU-5608118] Auxin signalling - Erythranthe guttata [Pathway:R-ZJA-5608118] Auxin signalling - Zoysia japonica [Pathway:R-CCR-5608118] Auxin signalling - Chondrus crispus [Pathway:R-VAN-5608118] Auxin signalling - Vigna angularis [Pathway:R-CSC-5608118] Auxin signalling - Cannabis sativa [Pathway:R-PPA-5608118] Auxin signalling - Physcomitrella patens [Pathway:R-FVE-5608118] Auxin signalling - Fragaria vesca [Pathway:R-CST-5608118] Auxin signalling - Camelina sativa [Pathway:R-CSA-5608118] Auxin signalling - Cucumis sativus [Pathway:R-ORU-5608118] Auxin signalling - Oryza rufipogon [Pathway:R-BOL-5608118] Auxin signalling - Brassica oleracea [Pathway:R-OEU-5608118] Auxin signalling - Olea europaea [Pathway:R-OLO-5608118] Auxin signalling - Oryza longistaminata [Pathway:R-AHY-5608118] Auxin signalling - Arachis hypogaea [Pathway:R-LST-5608118] Auxin signalling - Lathyrus sativus [Pathway:R-ATH-5608118] Auxin signalling - Arabidopsis thaliana [Pathway:R-SLY-5608118] Auxin signalling - Solanum lycopersicum [Pathway:R-TAE-5608118] Auxin signalling - Triticum aestivum [Pathway:R-FEX-5608118] Auxin signalling - Fraxinus excelsior (European ash) [Pathway:R-SHI-5608118] Auxin signalling - Salvia hispanica [Pathway:R-DCA-5608118] Auxin signalling - Daucus carota [Pathway:R-OOF-5608118] Auxin signalling - Oryza officinalis [Pathway:R-DRO-5608118] Auxin signalling - Dioscorea rotundata [Pathway:R-ACO-5608118] Auxin signalling - Ananas comosus [Pathway:R-VVN-5608118] Auxin signalling - Vitis vinifera [Pathway:R-BJU-5608118] Auxin signalling - Brassica juncea [Pathway:R-OBA-5608118] Auxin signalling - Oryza barthii [Pathway:R-MAC-5608118] Auxin signalling - Musa acuminata [Pathway:R-HLH-5608118] Auxin signalling - Humulus lupulus [Pathway:R-CCD-5608118] Auxin signalling - Cynara cardunculus var. scolymus [Pathway:R-CQI-5608118] Auxin signalling - Chenopodium quinoa [Pathway:R-AUM-5608118] Auxin signalling - Aegilops umbellulata [Pathway:R-CCL-5608118] Auxin signalling - Citrus clementina [Pathway:R-OSI-5608118] Auxin signalling - Oryza sativa Indica Group [Pathway:R-MPO-5608118] Auxin signalling - Marchantia polymorpha [Pathway:R-PVE-5608118] Auxin signalling - Pistacia vera [Pathway:R-SIT-5608118] Auxin signalling - Setaria italica [Pathway:R-DEX-5608118] Auxin signalling - Digitaria exilis [Pathway:R-ALY-5608118] Auxin signalling - Arabidopsis lyrata [Pathway:R-AOF-5608118] Auxin signalling - Asparagus officinalis [Pathway:R-MDO-5608118] Auxin signalling - Malus domestica [Pathway:R-GMA-5608118] Auxin signalling - Glycine max [Pathway:R-OES-5608118] Auxin signalling - Olea europaea var. sylvestris [Pathway:R-COL-5608118] Auxin signalling - Corchorus olitorius [Pathway:R-TSP-5608118] Auxin signalling - Triticum spelta subsp. spelta [Pathway:R-TPR-5608118] Auxin signalling - Trifolium pratense [Pathway:R-LPR-5608118] Auxin signalling - Lolium perenne [Pathway:R-STU-5608118] Auxin signalling - Solanum tuberosum [Pathway:R-VFA-5608118] Auxin signalling - Vicia faba var. faba [Pathway:R-OGR-5608118] Auxin signalling - Oryza meyeriana var. granulata [Pathway:R-VUN-5608118] Auxin signalling - Vigna unguiculata [Pathway:R-PDA-5608118] Auxin signalling - Phoenix dactylifera [Pathway:R-PVU-5608118] Auxin signalling - Phaseolus vulgaris [Pathway:R-ADU-5608118] Auxin signalling - Arachis duranensis [Pathway:R-RCH-5608118] Auxin signalling - Rosa chinensis [Pathway:R-CAR-5608118] Auxin signalling - Cicer arietinum [Pathway:R-PSA-5608118] Auxin signalling - Pisum sativum [Pathway:R-VRA-5608118] Auxin signalling - Vigna radiata [Pathway:R-CCI-5608118] Auxin signalling - Corymbia citriodora [Pathway:R-LAN-5608118] Auxin signalling - Lupinus angustifolius [Pathway:R-PHH-5608118] Auxin signalling - Panicum hallii var. hallii ("HAL2") [Pathway:R-SBI-5608118] Auxin signalling - Sorghum bicolor [Pathway:R-FCR-5608118] Auxin signalling - Ficus carica [Pathway:R-CBA-5608118] Auxin signalling - Chara braunii [Pathway:R-SIN-5608118] Auxin signalling - Sesamum indicum [Pathway:R-TTU-5608118] Auxin signalling - Triticum turgidum [Pathway:R-SMO-5608118] Auxin signalling - Selaginella moellendorffii [Pathway:R-BVU-5608118] Auxin signalling - Beta vulgaris [Pathway:R-OGU-5608118] Auxin signalling - Oryza glumaepatula [Pathway:R-QSU-5608118] Auxin signalling - Quercus suber [Pathway:R-OAU-5608118] Auxin signalling - Oryza australiensis [Pathway:R-GSO-5608118] Auxin signalling - Glycine soja [Pathway:R-CAN-5608118] Auxin signalling - Capsicum annuum [Pathway:R-JRE-5608118] Auxin signalling - Juglans regia [Pathway:R-ASA-5608118] Auxin signalling - Avena sativa [Pathway:R-OBR-5608118] Auxin signalling - Oryza brachyantha [Pathway:R-ECG-5608118] Auxin signalling - Echinochloa crus-galli [Pathway:R-SCR-5608118] Auxin signalling - Secale cereale [Pathway:R-CME-5608118] Auxin signalling - Cyanidioschyzon merolae [Pathway:R-OGL-5608118] Auxin signalling - Oryza glaberrima [Pathway:R-BNA-5608118] Auxin signalling - Brassica napus [Pathway:R-QLO-5608118] Auxin signalling - Quercus lobata [Pathway:R-ACH-5608118] Auxin signalling - Actinidia chinensis [Pathway:R-OKA-5608118] Auxin signalling - Oryza sativa aus subgroup [Pathway:R-TUR-5608118] Auxin signalling - Triticum urartu [Pathway:R-PSO-5608118] Auxin signalling - Papaver somniferum [Pathway:R-PPE-5608118] Auxin signalling - Prunus persica [Pathway:R-TCA-5608118] Auxin signalling - Theobroma cacao [Pathway:R-CLA-5608118] Auxin signalling - Citrullus lanatus [Pathway:R-LSA-5608118] Auxin signalling - Lactuca sativa [Pathway:R-OPU-5608118] Auxin signalling - Oryza punctata [Pathway:R-NNU-5608118] Auxin signalling - Nelumbo nucifera [Pathway:R-ONI-5608118] Auxin signalling - Oryza nivara [Pathway:R-HVU-5608118] Auxin signalling - Hordeum vulgare [Pathway:R-BRA-5608118] Auxin signalling - Brassica rapa [Pathway:R-ZMY-5608118] Auxin signalling - Zea mays ver5 [Pathway:R-SSP-5608118] Auxin signalling - Saccharum spontaneum [Pathway:R-JCU-5608118] Auxin signalling - Jatropha curcas [Pathway:R-ZMA-5608118] Auxin signalling - Zea mays [Pathway:R-OME-5608118] Auxin signalling - Oryza meridionalis [Pathway:R-MTR-5608118] Auxin signalling - Medicago truncatula [Pathway:R-ATR-5608118] Auxin signalling - Amborella trichopoda [Pathway:R-CCP-5608118] Auxin signalling - Corchorus capsularis [Pathway:R-PTA-5608118] Auxin signalling - Pinus taeda [Pathway:R-CSK-5608118] Auxin signalling - Cannabis sativa subsp. indica [Pathway:R-PAV-5608118] Auxin signalling - Prunus avium [Pathway:R-SVI-5608118] Auxin signalling - Setaria viridis [Pathway:R-ETE-5608118] Auxin signalling - Eragrostis tef [Pathway:R-TTI-5608118] Auxin signalling - Triticum timopheevii subsp. timopheevii
revised	[InstanceEdit:5679321] Amarasinghe, Vindhya, 2015-02-12
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-5608118
summation	[Summation:5608223] Auxin perception and signaling

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