Plant Reactome Pathway Database - Plant Reactome Pathway Database

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Circadian rhythm

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authored	[InstanceEdit:8854000] Gupta, Parul, 2016-01-25
compartment	[Compartment:7660] nucleoplasm [Compartment:70101] cytosol
created	[InstanceEdit:8933720] Gupta, Parul, 2016-08-08
dbId	8933811
displayName	Circadian rhythm
followingEvent	[BlackBoxEvent:R-OSA-8934101] Expression of GI - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:3000] circadian rhythm
hasDiagram	true
hasEvent	[BlackBoxEvent:R-OSA-8933858] Binding of COP1 to ELF3 - Oryza sativa [BlackBoxEvent:R-OSA-8933839] Expression of CCA1 - Oryza sativa [BlackBoxEvent:R-OSA-8933822] Expression of CDF1 - Oryza sativa [BlackBoxEvent:R-OSA-8933778] Expression of CHE - Oryza sativa [BlackBoxEvent:R-OSA-8933786] Expression of ELF3 - Oryza sativa [BlackBoxEvent:R-OSA-8933771] Expression of LHY - Oryza sativa [BlackBoxEvent:R-OSA-8933823] Expression of PRR1/TOC1 - Oryza sativa [BlackBoxEvent:R-OSA-8933848] Expression of PRR37/73 - Oryza sativa [BlackBoxEvent:R-OSA-8933855] Expression of PRR95 - Oryza sativa [BlackBoxEvent:R-OSA-8933773] translocation of PHYA from cytosol to nucleoplasm - Oryza sativa [BlackBoxEvent:R-OSA-8933749] translocation of PHYB from cytosol to nucleoplasm - Oryza sativa [BlackBoxEvent:R-OSA-8933844] ubiquitin mediated degradation of CDF1 - Oryza sativa [BlackBoxEvent:R-OSA-8933793] ubiquitin mediated degradation of GI protein - Oryza sativa [BlackBoxEvent:R-OSA-8933768] ubiquitin mediated degradation of TOC1 - Oryza sativa [Reaction:R-OSA-8933729] Phosphorylation of CCA1 - Oryza sativa [Reaction:R-OSA-8933819] conversion of active PHYA into inactive PHYA - Oryza sativa [Reaction:R-OSA-8933809] conversion of active PHYB into inactive PHYB - Oryza sativa [Reaction:R-OSA-8933717] conversion of inactive PHYA into active PHYA - Oryza sativa [Reaction:R-OSA-8933727] conversion of inactive PHYB into active PHYB - Oryza sativa [Reaction:R-OSA-8933765] Formation of FKF1:GI complex under blue light - Oryza sativa [Reaction:R-OSA-8933795] Formation of PIF3:PhyA complex unde red light - Oryza sativa [Reaction:R-OSA-8933726] Formation of PIF3:PhyB complex under red light - Oryza sativa [BlackBoxEvent:R-OSA-8933825] Activation of CRY - Oryza sativa [Reaction:R-OSA-8933838] Stabilization of ZTL - Oryza sativa [BlackBoxEvent:R-OSA-8933736] ubiquitin mediated degradation of HY5 - Oryza sativa [Reaction:R-OSA-8933846] Formation of COP1:SPA1 complex - Oryza sativa [BlackBoxEvent:R-OSA-9605025] Down-regulation of circadian rhythm - Oryza sativa [BlackBoxEvent:R-OSA-9605024] Up-regulation of circadian rhythm - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:8933830] Circadian clock and photoperiodic response in Arabidopsis: from seasonal flowering to redox homeostasis [LiteratureReference:8933849] Characterization of the rice circadian clock-associated pseudo-response regulators in Arabidopsis thaliana [LiteratureReference:8933801] Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response [LiteratureReference:8933818] COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability [LiteratureReference:8933815] ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway [LiteratureReference:8933776] ELF3 modulates resetting of the circadian clock in Arabidopsis [LiteratureReference:1600636] FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis [LiteratureReference:8933829] Light quality-dependent nuclear import of the plant photoreceptors phytochrome A and B [LiteratureReference:8933746] The functional interplay between protein kinase CK2 and CCA1 transcriptional activity is essential for clock temperature compensation in Arabidopsis [LiteratureReference:8933791] The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm [LiteratureReference:8933826] The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Circadian rhythm
orthologousEvent	[TopLevelPathway:R-PPE-8933811] Circadian rhythm - Prunus persica [TopLevelPathway:R-TSP-8933811] Circadian rhythm - Triticum spelta subsp. spelta [TopLevelPathway:R-COL-8933811] Circadian rhythm - Corchorus olitorius [TopLevelPathway:R-OGU-8933811] Circadian rhythm - Oryza glumaepatula [TopLevelPathway:R-SHI-8933811] Circadian rhythm - Salvia hispanica [TopLevelPathway:R-ATH-8933811] Circadian rhythm - Arabidopsis thaliana [TopLevelPathway:R-CSC-8933811] Circadian rhythm - Cannabis sativa [TopLevelPathway:R-SBI-8933811] Circadian rhythm - Sorghum bicolor [TopLevelPathway:R-OOF-8933811] Circadian rhythm - Oryza officinalis [TopLevelPathway:R-MGU-8933811] Circadian rhythm - Erythranthe guttata [TopLevelPathway:R-JCU-8933811] Circadian rhythm - Jatropha curcas [TopLevelPathway:R-CCI-8933811] Circadian rhythm - Corymbia citriodora [TopLevelPathway:R-BJU-8933811] Circadian rhythm - Brassica juncea [TopLevelPathway:R-OSI-8933811] Circadian rhythm - Oryza sativa Indica Group [TopLevelPathway:R-LST-8933811] Circadian rhythm - Lathyrus sativus [TopLevelPathway:R-HLH-8933811] Circadian rhythm - Humulus lupulus [TopLevelPathway:R-QLO-8933811] Circadian rhythm - Quercus lobata [TopLevelPathway:R-PVU-8933811] Circadian rhythm - Phaseolus vulgaris [TopLevelPathway:R-DEX-8933811] Circadian rhythm - Digitaria exilis [TopLevelPathway:R-OLO-8933811] Circadian rhythm - Oryza longistaminata [TopLevelPathway:R-MTR-8933811] Circadian rhythm - Medicago truncatula [TopLevelPathway:R-BNA-8933811] Circadian rhythm - Brassica napus [TopLevelPathway:R-OMI-8933811] Circadian rhythm - Oryza minuta [TopLevelPathway:R-NCO-8933811] Circadian rhythm - Nymphaea colorata [TopLevelPathway:R-PAV-8933811] Circadian rhythm - Prunus avium [TopLevelPathway:R-PSO-8933811] Circadian rhythm - Papaver somniferum [TopLevelPathway:R-LAN-8933811] Circadian rhythm - Lupinus angustifolius [TopLevelPathway:R-PED-8933811] Circadian rhythm - Phyllostachys edulis [TopLevelPathway:R-DRO-8933811] Circadian rhythm - Dioscorea rotundata [TopLevelPathway:R-PVE-8933811] Circadian rhythm - Pistacia vera [TopLevelPathway:R-SIT-8933811] Circadian rhythm - Setaria italica [TopLevelPathway:R-HVU-8933811] Circadian rhythm - Hordeum vulgare [TopLevelPathway:R-AOF-8933811] Circadian rhythm - Asparagus officinalis [TopLevelPathway:R-AUM-8933811] Circadian rhythm - Aegilops umbellulata [TopLevelPathway:R-HLP-8933811] Circadian rhythm - Humulus lupulus var. lupulus [TopLevelPathway:R-CCD-8933811] Circadian rhythm - Cynara cardunculus var. scolymus [TopLevelPathway:R-CRU-8933811] Circadian rhythm - Capsella rubella [TopLevelPathway:R-LPR-8933811] Circadian rhythm - Lolium perenne [TopLevelPathway:R-PSA-8933811] Circadian rhythm - Pisum sativum [TopLevelPathway:R-OPU-8933811] Circadian rhythm - Oryza punctata [TopLevelPathway:R-ZMA-8933811] Circadian rhythm - Zea mays [TopLevelPathway:R-SPC-8933811] Circadian rhythm - Synechocystis sp. PCC 6803 [TopLevelPathway:R-TTI-8933811] Circadian rhythm - Triticum timopheevii subsp. timopheevii [TopLevelPathway:R-PHH-8933811] Circadian rhythm - Panicum hallii var. hallii ("HAL2") [TopLevelPathway:R-RCH-8933811] Circadian rhythm - Rosa chinensis [TopLevelPathway:R-ZMY-8933811] Circadian rhythm - Zea mays ver5 [TopLevelPathway:R-AHA-8933811] Circadian rhythm - Arabidopsis halleri [TopLevelPathway:R-GRA-8933811] Circadian rhythm - Gossypium raimondii [TopLevelPathway:R-ATA-8933811] Circadian rhythm - Aegilops tauschii [TopLevelPathway:R-PTI-8933811] Circadian rhythm - Populus trichocarpa [TopLevelPathway:R-SSP-8933811] Circadian rhythm - Saccharum spontaneum [TopLevelPathway:R-ITR-8933811] Circadian rhythm - Ipomoea triloba [TopLevelPathway:R-SMO-8933811] Circadian rhythm - Selaginella moellendorffii [TopLevelPathway:R-CCP-8933811] Circadian rhythm - Corchorus capsularis [TopLevelPathway:R-ASA-8933811] Circadian rhythm - Avena sativa [TopLevelPathway:R-MES-8933811] Circadian rhythm - Manihot esculenta [TopLevelPathway:R-BVU-8933811] Circadian rhythm - Beta vulgaris [TopLevelPathway:R-AIP-8933811] Circadian rhythm - Arachis ipaensis [TopLevelPathway:R-VUN-8933811] Circadian rhythm - Vigna unguiculata [TopLevelPathway:R-FEX-8933811] Circadian rhythm - Fraxinus excelsior (European ash) [TopLevelPathway:R-OAU-8933811] Circadian rhythm - Oryza australiensis [TopLevelPathway:R-STU-8933811] Circadian rhythm - Solanum tuberosum [TopLevelPathway:R-QSU-8933811] Circadian rhythm - Quercus suber [TopLevelPathway:R-CBA-8933811] Circadian rhythm - Chara braunii [TopLevelPathway:R-PDA-8933811] Circadian rhythm - Phoenix dactylifera [TopLevelPathway:R-ECG-8933811] Circadian rhythm - Echinochloa crus-galli [TopLevelPathway:R-BOL-8933811] Circadian rhythm - Brassica oleracea [TopLevelPathway:R-TCA-8933811] Circadian rhythm - Theobroma cacao [TopLevelPathway:R-VFA-8933811] Circadian rhythm - Vicia faba var. faba [TopLevelPathway:R-ADU-8933811] Circadian rhythm - Arachis duranensis [TopLevelPathway:R-OKA-8933811] Circadian rhythm - Oryza sativa aus subgroup [TopLevelPathway:R-PPA-8933811] Circadian rhythm - Physcomitrella patens [TopLevelPathway:R-OGL-8933811] Circadian rhythm - Oryza glaberrima [TopLevelPathway:R-VRA-8933811] Circadian rhythm - Vigna radiata [TopLevelPathway:R-LSA-8933811] Circadian rhythm - Lactuca sativa [TopLevelPathway:R-CAN-8933811] Circadian rhythm - Capsicum annuum [TopLevelPathway:R-VAN-8933811] Circadian rhythm - Vigna angularis [TopLevelPathway:R-SCR-8933811] Circadian rhythm - Secale cereale [TopLevelPathway:R-SIN-8933811] Circadian rhythm - Sesamum indicum [TopLevelPathway:R-NAT-8933811] Circadian rhythm - Nicotiana attenuata [TopLevelPathway:R-CCN-8933811] Circadian rhythm - Coffea canephora [TopLevelPathway:R-TAE-8933811] Circadian rhythm - Triticum aestivum [TopLevelPathway:R-MDO-8933811] Circadian rhythm - Malus domestica [TopLevelPathway:R-OLU-8933811] Circadian rhythm - Ostreococcus lucimarinus [TopLevelPathway:R-ONI-8933811] Circadian rhythm - Oryza nivara [TopLevelPathway:R-CRE-8933811] Circadian rhythm - Chlamydomonas reinhardtii [TopLevelPathway:R-PAB-8933811] Circadian rhythm - Picea abies [TopLevelPathway:R-ETE-8933811] Circadian rhythm - Eragrostis tef [TopLevelPathway:R-PHA-8933811] Circadian rhythm - Panicum hallii ("FIL2") [TopLevelPathway:R-MAC-8933811] Circadian rhythm - Musa acuminata [TopLevelPathway:R-CQI-8933811] Circadian rhythm - Chenopodium quinoa [TopLevelPathway:R-CSA-8933811] Circadian rhythm - Cucumis sativus [TopLevelPathway:R-MPO-8933811] Circadian rhythm - Marchantia polymorpha [TopLevelPathway:R-AHY-8933811] Circadian rhythm - Arachis hypogaea [TopLevelPathway:R-GMA-8933811] Circadian rhythm - Glycine max [TopLevelPathway:R-OGR-8933811] Circadian rhythm - Oryza meyeriana var. granulata [TopLevelPathway:R-ATR-8933811] Circadian rhythm - Amborella trichopoda [TopLevelPathway:R-EGR-8933811] Circadian rhythm - Eucalyptus grandis [TopLevelPathway:R-OES-8933811] Circadian rhythm - Olea europaea var. sylvestris [TopLevelPathway:R-FVE-8933811] Circadian rhythm - Fragaria vesca [TopLevelPathway:R-FCR-8933811] Circadian rhythm - Ficus carica [TopLevelPathway:R-CSK-8933811] Circadian rhythm - Cannabis sativa subsp. indica [TopLevelPathway:R-SVI-8933811] Circadian rhythm - Setaria viridis [TopLevelPathway:R-PTA-8933811] Circadian rhythm - Pinus taeda [TopLevelPathway:R-BRA-8933811] Circadian rhythm - Brassica rapa [TopLevelPathway:R-ALY-8933811] Circadian rhythm - Arabidopsis lyrata [TopLevelPathway:R-TUR-8933811] Circadian rhythm - Triticum urartu [TopLevelPathway:R-CST-8933811] Circadian rhythm - Camelina sativa [TopLevelPathway:R-OEU-8933811] Circadian rhythm - Olea europaea [TopLevelPathway:R-ECU-8933811] Circadian rhythm - Eragrostis curvula [TopLevelPathway:R-LPE-8933811] Circadian rhythm - Leersia perrieri [TopLevelPathway:R-TDI-8933811] Circadian rhythm - Triticum dicoccoides [TopLevelPathway:R-CAR-8933811] Circadian rhythm - Cicer arietinum [TopLevelPathway:R-VVN-8933811] Circadian rhythm - Vitis vinifera [TopLevelPathway:R-ACO-8933811] Circadian rhythm - Ananas comosus [TopLevelPathway:R-OME-8933811] Circadian rhythm - Oryza meridionalis [TopLevelPathway:R-HAN-8933811] Circadian rhythm - Helianthus annuus [TopLevelPathway:R-OBA-8933811] Circadian rhythm - Oryza barthii [TopLevelPathway:R-NNU-8933811] Circadian rhythm - Nelumbo nucifera [TopLevelPathway:R-CSI-8933811] Circadian rhythm - Citrus sinensis [TopLevelPathway:R-CML-8933811] Circadian rhythm - Cucumis melo [TopLevelPathway:R-TPR-8933811] Circadian rhythm - Trifolium pratense [TopLevelPathway:R-BDI-8933811] Circadian rhythm - Brachypodium distachyon [TopLevelPathway:R-CCL-8933811] Circadian rhythm - Citrus clementina [TopLevelPathway:R-JRE-8933811] Circadian rhythm - Juglans regia [TopLevelPathway:R-ACH-8933811] Circadian rhythm - Actinidia chinensis [TopLevelPathway:R-SLY-8933811] Circadian rhythm - Solanum lycopersicum [TopLevelPathway:R-ORU-8933811] Circadian rhythm - Oryza rufipogon [TopLevelPathway:R-CCA-8933811] Circadian rhythm - Cajanus cajan [TopLevelPathway:R-CLA-8933811] Circadian rhythm - Citrullus lanatus [TopLevelPathway:R-TTU-8933811] Circadian rhythm - Triticum turgidum [TopLevelPathway:R-DCA-8933811] Circadian rhythm - Daucus carota [TopLevelPathway:R-OBR-8933811] Circadian rhythm - Oryza brachyantha [TopLevelPathway:R-ZJA-8933811] Circadian rhythm - Zoysia japonica [TopLevelPathway:R-GSO-8933811] Circadian rhythm - Glycine soja
schemaClass	TopLevelPathway
species	[Species:186860] Oryza sativa
stId	R-OSA-8933811
summation	[Summation:8933840] Plants use light and dark cycles to predict environmental ch...

Referrals

(precedingEvent)

[BlackBoxEvent:R-OSA-8934101] Expression of GI - Oryza sativa

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