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UDP-L-arabinose biosynthesis and transport

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authored	[InstanceEdit:9681881] Naithani, Sushma, 2020-03-30
created	[InstanceEdit:1164949] Wu, Guanming, 2010-12-11
dbId	1119574
displayName	UDP-L-arabinose biosynthesis and transport
edited	[InstanceEdit:5151898] Amoss, Kindra, 2013-11-05 [InstanceEdit:5151899] Dharmawardhana, DP, 2013-11-17 [InstanceEdit:9681868] Rao, Shayla, 2020-04-06 [InstanceEdit:9681881] Naithani, Sushma, 2020-03-30
eventOf	[Pathway:R-OSA-2883407] Carbohydrate metabolism - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:262088] UDP-L-arabinose biosynthetic process
hasDiagram	true
hasEvent	[Reaction:R-OSA-9681897] UDP-glucose + 2 NAD+ + H2O -->UDP-glucuronate + 2 NADH + 2 H+ - Oryza sativa [Reaction:R-OSA-9681878] UDP-D-glucuronate + H+ -->UDP-D-xylose + CO2 - Oryza sativa [Reaction:R-OSA-9681934] UDP-Xyl->UDP-L-arabinopyranose - Oryza sativa [Reaction:R-OSA-9681858] UDP-L-arabinopyranose->UDP-Xyl - Oryza sativa [Reaction:R-OSA-1120873] L-arabinose-->beta-L-arabinose 1-phosphate - Oryza sativa [Reaction:R-OSA-1120098] beta-L-arabinose 1-phosphate+UTP->UDP-L-arabinose+diphosphate - Oryza sativa [Reaction:R-OSA-9681935] UDP-L-arabinose--->UDP-arabinofuranose - Oryza sativa [Reaction:R-OSA-9681922] transport of UDP-AraF from cyt to Golgi - Oryza sativa [BlackBoxEvent:R-OSA-9681862] Transport of UDP-L-arabinopyranose from golgi lumen to cytosol - Oryza sativa [Reaction:R-OSA-9681939] Transport of UDP-glucuronate from cyt to golgi lumen - Oryza sativa [BlackBoxEvent:R-OSA-9681877] Transport of arabinose from cell wall to cytosol - Oryza sativa [Reaction:R-OSA-9681879] UDP-arabinofuranose->UDP-L-arabinose - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:1154524] Arabinose kinase-deficient mutant of Arabidopsis thaliana. [LiteratureReference:1154575] The mur4 mutant of arabidopsis is partially defective in the de novo synthesis of uridine diphospho L-arabinose [LiteratureReference:9681924] Molecular characteristics of plant UDP-arabinopyranose mutases [LiteratureReference:9681884] Nucleoside diphosphate-sugar 4-epimerases. II. Uridine diphosphate arabinose 4-epimerase of wheat germ [LiteratureReference:1154522] Phosphorylation of D-galactose and L-arabinose by extracts from Phaseolus aureus seedlings [LiteratureReference:9681937] Purification and biochemical characterization of recombinant rice UDP-arabinopyranose mutase generated in insect cells [LiteratureReference:5308077] The biosynthesis of L-arabinose in plants: molecular cloning and characterization of a Golgi-localized UDP-D-xylose 4-epimerase encoded by the MUR4 gene of Arabidopsis [LiteratureReference:1154539] UDP-sugar pyrophosphorylase with broad substrate specificity toward various monosaccharide 1-phosphates from pea sprouts [LiteratureReference:9681902] The elaborate route for UDP-arabinose delivery into the Golgi of plants
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	UDP-L-arabinose biosynthesis and transport pathway101675
orthologousEvent	[Pathway:R-PTA-1119574] UDP-L-arabinose biosynthesis and transport - Pinus taeda [Pathway:R-VFA-1119574] UDP-L-arabinose biosynthesis and transport - Vicia faba var. faba [Pathway:R-CSI-1119574] UDP-L-arabinose biosynthesis and transport - Citrus sinensis [Pathway:R-MES-1119574] UDP-L-arabinose biosynthesis and transport - Manihot esculenta [Pathway:R-OMI-1119574] UDP-L-arabinose biosynthesis and transport - Oryza minuta [Pathway:R-VRA-1119574] UDP-L-arabinose biosynthesis and transport - Vigna radiata [Pathway:R-OAU-1119574] UDP-L-arabinose biosynthesis and transport - Oryza australiensis [Pathway:R-CCP-1119574] UDP-L-arabinose biosynthesis and transport - Corchorus capsularis [Pathway:R-OBR-1119574] UDP-L-arabinose biosynthesis and transport - Oryza brachyantha [Pathway:R-TTU-1119574] UDP-L-arabinose biosynthesis and transport - Triticum turgidum [Pathway:R-GSO-1119574] UDP-L-arabinose biosynthesis and transport - Glycine soja [Pathway:R-ALY-1119574] UDP-L-arabinose biosynthesis and transport - Arabidopsis lyrata [Pathway:R-CCN-1119574] UDP-L-arabinose biosynthesis and transport - Coffea canephora [Pathway:R-VAN-1119574] UDP-L-arabinose biosynthesis and transport - Vigna angularis [Pathway:R-PTI-1119574] UDP-L-arabinose biosynthesis and transport - Populus trichocarpa [Pathway:R-ECU-1119574] UDP-L-arabinose biosynthesis and transport - Eragrostis curvula [Pathway:R-OKA-1119574] UDP-L-arabinose biosynthesis and transport - Oryza sativa aus subgroup [Pathway:R-LAN-1119574] UDP-L-arabinose biosynthesis and transport - Lupinus angustifolius [Pathway:R-CRE-1119574] UDP-L-arabinose biosynthesis and transport - Chlamydomonas reinhardtii [Pathway:R-ASA-1119574] UDP-L-arabinose biosynthesis and transport - Avena sativa [Pathway:R-PHA-1119574] UDP-L-arabinose biosynthesis and transport - Panicum hallii ("FIL2") [Pathway:R-BDI-1119574] UDP-L-arabinose biosynthesis and transport - Brachypodium distachyon [Pathway:R-PSO-1119574] UDP-L-arabinose biosynthesis and transport - Papaver somniferum [Pathway:R-PED-1119574] UDP-L-arabinose biosynthesis and transport - Phyllostachys edulis [Pathway:R-AHY-1119574] UDP-L-arabinose biosynthesis and transport - Arachis hypogaea [Pathway:R-CME-1119574] UDP-L-arabinose biosynthesis and transport - Cyanidioschyzon merolae [Pathway:R-OOF-1119574] UDP-L-arabinose biosynthesis and transport - Oryza officinalis [Pathway:R-COL-1119574] UDP-L-arabinose biosynthesis and transport - Corchorus olitorius [Pathway:R-FCR-1119574] UDP-L-arabinose biosynthesis and transport - Ficus carica [Pathway:R-QSU-1119574] UDP-L-arabinose biosynthesis and transport - Quercus suber [Pathway:R-ECG-1119574] UDP-L-arabinose biosynthesis and transport - Echinochloa crus-galli [Pathway:R-OEU-1119574] UDP-L-arabinose biosynthesis and transport - Olea europaea [Pathway:R-CBA-1119574] UDP-L-arabinose biosynthesis and transport - Chara braunii [Pathway:R-BNA-1119574] UDP-L-arabinose biosynthesis and transport - Brassica napus [Pathway:R-CST-1119574] UDP-L-arabinose biosynthesis and transport - Camelina sativa [Pathway:R-ATR-1119574] UDP-L-arabinose biosynthesis and transport - Amborella trichopoda [Pathway:R-CCR-1119574] UDP-L-arabinose biosynthesis and transport - Chondrus crispus [Pathway:R-FVE-1119574] UDP-L-arabinose biosynthesis and transport - Fragaria vesca [Pathway:R-CLA-1119574] UDP-L-arabinose biosynthesis and transport - Citrullus lanatus [Pathway:R-SLY-1119574] UDP-L-arabinose biosynthesis and transport - Solanum lycopersicum [Pathway:R-CAN-1119574] UDP-L-arabinose biosynthesis and transport - Capsicum annuum [Pathway:R-TUR-1119574] UDP-L-arabinose biosynthesis and transport - Triticum urartu [Pathway:R-ZJA-1119574] UDP-L-arabinose biosynthesis and transport - Zoysia japonica [Pathway:R-SVI-1119574] UDP-L-arabinose biosynthesis and transport - Setaria viridis [Pathway:R-SCR-1119574] UDP-L-arabinose biosynthesis and transport - Secale cereale [Pathway:R-HVU-1119574] UDP-L-arabinose biosynthesis and transport - Hordeum vulgare [Pathway:R-OPU-1119574] UDP-L-arabinose biosynthesis and transport - Oryza punctata [Pathway:R-CQI-1119574] UDP-L-arabinose biosynthesis and transport - Chenopodium quinoa [Pathway:R-PHH-1119574] UDP-L-arabinose biosynthesis and transport - Panicum hallii var. hallii ("HAL2") [Pathway:R-OSI-1119574] UDP-L-arabinose biosynthesis and transport - Oryza sativa Indica Group [Pathway:R-ZMY-1119574] UDP-L-arabinose biosynthesis and transport - Zea mays ver5 [Pathway:R-SHI-1119574] UDP-L-arabinose biosynthesis and transport - Salvia hispanica [Pathway:R-LPE-1119574] UDP-L-arabinose biosynthesis and transport - Leersia perrieri [Pathway:R-OES-1119574] UDP-L-arabinose biosynthesis and transport - Olea europaea var. sylvestris [Pathway:R-TAE-1119574] UDP-L-arabinose biosynthesis and transport - Triticum aestivum [Pathway:R-ATH-1119574] UDP-L-arabinose biosynthesis and transport - Arabidopsis thaliana [Pathway:R-ETE-1119574] UDP-L-arabinose biosynthesis and transport - Eragrostis tef [Pathway:R-BJU-1119574] UDP-L-arabinose biosynthesis and transport - Brassica juncea [Pathway:R-PVU-1119574] UDP-L-arabinose biosynthesis and transport - Phaseolus vulgaris [Pathway:R-SPC-1119574] UDP-L-arabinose biosynthesis and transport - Synechocystis sp. PCC 6803 [Pathway:R-OBA-1119574] UDP-L-arabinose biosynthesis and transport - Oryza barthii [Pathway:R-SSP-1119574] UDP-L-arabinose biosynthesis and transport - Saccharum spontaneum [Pathway:R-OLU-1119574] UDP-L-arabinose biosynthesis and transport - Ostreococcus lucimarinus [Pathway:R-MPO-1119574] UDP-L-arabinose biosynthesis and transport - Marchantia polymorpha [Pathway:R-OME-1119574] UDP-L-arabinose biosynthesis and transport - Oryza meridionalis [Pathway:R-GSU-1119574] UDP-L-arabinose biosynthesis and transport - Galdieria sulphuraria [Pathway:R-OLO-1119574] UDP-L-arabinose biosynthesis and transport - Oryza longistaminata [Pathway:R-HAN-1119574] UDP-L-arabinose biosynthesis and transport - Helianthus annuus [Pathway:R-AIP-1119574] UDP-L-arabinose biosynthesis and transport - Arachis ipaensis [Pathway:R-LPR-1119574] UDP-L-arabinose biosynthesis and transport - Lolium perenne [Pathway:R-CML-1119574] UDP-L-arabinose biosynthesis and transport - Cucumis melo [Pathway:R-EGR-1119574] UDP-L-arabinose biosynthesis and transport - Eucalyptus grandis [Pathway:R-PDA-1119574] UDP-L-arabinose biosynthesis and transport - Phoenix dactylifera [Pathway:R-OGR-1119574] UDP-L-arabinose biosynthesis and transport - Oryza meyeriana var. granulata [Pathway:R-JRE-1119574] UDP-L-arabinose biosynthesis and transport - Juglans regia [Pathway:R-VUN-1119574] UDP-L-arabinose biosynthesis and transport - Vigna unguiculata [Pathway:R-SIT-1119574] UDP-L-arabinose biosynthesis and transport - Setaria italica [Pathway:R-ITR-1119574] UDP-L-arabinose biosynthesis and transport - Ipomoea triloba [Pathway:R-STU-1119574] UDP-L-arabinose biosynthesis and transport - Solanum tuberosum [Pathway:R-ZMA-1119574] UDP-L-arabinose biosynthesis and transport - Zea mays [Pathway:R-BRA-1119574] UDP-L-arabinose biosynthesis and transport - Brassica rapa [Pathway:R-CCD-1119574] UDP-L-arabinose biosynthesis and transport - Cynara cardunculus var. scolymus [Pathway:R-GMA-1119574] UDP-L-arabinose biosynthesis and transport - Glycine max [Pathway:R-PVE-1119574] UDP-L-arabinose biosynthesis and transport - Pistacia vera [Pathway:R-TTI-1119574] UDP-L-arabinose biosynthesis and transport - Triticum timopheevii subsp. timopheevii [Pathway:R-HLP-1119574] UDP-L-arabinose biosynthesis and transport - Humulus lupulus var. lupulus [Pathway:R-PSA-1119574] UDP-L-arabinose biosynthesis and transport - Pisum sativum [Pathway:R-CRU-1119574] UDP-L-arabinose biosynthesis and transport - Capsella rubella [Pathway:R-OGU-1119574] UDP-L-arabinose biosynthesis and transport - Oryza glumaepatula [Pathway:R-BVU-1119574] UDP-L-arabinose biosynthesis and transport - Beta vulgaris [Pathway:R-MGU-1119574] UDP-L-arabinose biosynthesis and transport - Erythranthe guttata [Pathway:R-AHA-1119574] UDP-L-arabinose biosynthesis and transport - Arabidopsis halleri [Pathway:R-ACH-1119574] UDP-L-arabinose biosynthesis and transport - Actinidia chinensis [Pathway:R-CCI-1119574] UDP-L-arabinose biosynthesis and transport - Corymbia citriodora [Pathway:R-NCO-1119574] UDP-L-arabinose biosynthesis and transport - Nymphaea colorata [Pathway:R-PPA-1119574] UDP-L-arabinose biosynthesis and transport - Physcomitrella patens [Pathway:R-CAR-1119574] UDP-L-arabinose biosynthesis and transport - Cicer arietinum [Pathway:R-FEX-1119574] UDP-L-arabinose biosynthesis and transport - Fraxinus excelsior (European ash) [Pathway:R-SMO-1119574] UDP-L-arabinose biosynthesis and transport - Selaginella moellendorffii [Pathway:R-QLO-1119574] UDP-L-arabinose biosynthesis and transport - Quercus lobata [Pathway:R-ATA-1119574] UDP-L-arabinose biosynthesis and transport - Aegilops tauschii [Pathway:R-LSA-1119574] UDP-L-arabinose biosynthesis and transport - Lactuca sativa [Pathway:R-OGL-1119574] UDP-L-arabinose biosynthesis and transport - Oryza glaberrima [Pathway:R-BOL-1119574] UDP-L-arabinose biosynthesis and transport - Brassica oleracea [Pathway:R-CSA-1119574] UDP-L-arabinose biosynthesis and transport - Cucumis sativus [Pathway:R-ORU-1119574] UDP-L-arabinose biosynthesis and transport - Oryza rufipogon [Pathway:R-DEX-1119574] UDP-L-arabinose biosynthesis and transport - Digitaria exilis [Pathway:R-DRO-1119574] UDP-L-arabinose biosynthesis and transport - Dioscorea rotundata [Pathway:R-DCA-1119574] UDP-L-arabinose biosynthesis and transport - Daucus carota [Pathway:R-PAV-1119574] UDP-L-arabinose biosynthesis and transport - Prunus avium [Pathway:R-CSC-1119574] UDP-L-arabinose biosynthesis and transport - Cannabis sativa [Pathway:R-ACO-1119574] UDP-L-arabinose biosynthesis and transport - Ananas comosus [Pathway:R-CSK-1119574] UDP-L-arabinose biosynthesis and transport - Cannabis sativa subsp. indica [Pathway:R-HLH-1119574] UDP-L-arabinose biosynthesis and transport - Humulus lupulus [Pathway:R-TSP-1119574] UDP-L-arabinose biosynthesis and transport - Triticum spelta subsp. spelta [Pathway:R-MTR-1119574] UDP-L-arabinose biosynthesis and transport - Medicago truncatula [Pathway:R-AUM-1119574] UDP-L-arabinose biosynthesis and transport - Aegilops umbellulata [Pathway:R-SIN-1119574] UDP-L-arabinose biosynthesis and transport - Sesamum indicum [Pathway:R-GRA-1119574] UDP-L-arabinose biosynthesis and transport - Gossypium raimondii [Pathway:R-PAB-1119574] UDP-L-arabinose biosynthesis and transport - Picea abies [Pathway:R-AOF-1119574] UDP-L-arabinose biosynthesis and transport - Asparagus officinalis [Pathway:R-VVN-1119574] UDP-L-arabinose biosynthesis and transport - Vitis vinifera [Pathway:R-ONI-1119574] UDP-L-arabinose biosynthesis and transport - Oryza nivara [Pathway:R-NAT-1119574] UDP-L-arabinose biosynthesis and transport - Nicotiana attenuata [Pathway:R-JCU-1119574] UDP-L-arabinose biosynthesis and transport - Jatropha curcas [Pathway:R-MDO-1119574] UDP-L-arabinose biosynthesis and transport - Malus domestica [Pathway:R-NNU-1119574] UDP-L-arabinose biosynthesis and transport - Nelumbo nucifera [Pathway:R-SBI-1119574] UDP-L-arabinose biosynthesis and transport - Sorghum bicolor [Pathway:R-PPE-1119574] UDP-L-arabinose biosynthesis and transport - Prunus persica [Pathway:R-CCL-1119574] UDP-L-arabinose biosynthesis and transport - Citrus clementina [Pathway:R-TDI-1119574] UDP-L-arabinose biosynthesis and transport - Triticum dicoccoides [Pathway:R-ADU-1119574] UDP-L-arabinose biosynthesis and transport - Arachis duranensis [Pathway:R-LST-1119574] UDP-L-arabinose biosynthesis and transport - Lathyrus sativus [Pathway:R-RCH-1119574] UDP-L-arabinose biosynthesis and transport - Rosa chinensis [Pathway:R-CCA-1119574] UDP-L-arabinose biosynthesis and transport - Cajanus cajan [Pathway:R-MAC-1119574] UDP-L-arabinose biosynthesis and transport - Musa acuminata [Pathway:R-TPR-1119574] UDP-L-arabinose biosynthesis and transport - Trifolium pratense [Pathway:R-TCA-1119574] UDP-L-arabinose biosynthesis and transport - Theobroma cacao
reviewed	[InstanceEdit:9681881] Naithani, Sushma, 2020-03-30
revised	[InstanceEdit:9681881] Naithani, Sushma, 2020-03-30
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-1119574
summation	[Summation:9681909] L-Arabinose, the 4-epimer of D-xylose, is a monosaccharide f...

Referrals

(hasEvent)

[Pathway:R-OSA-2883407] Carbohydrate metabolism - Oryza sativa