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Choline biosynthesis I

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authored	[InstanceEdit:8854111] Gupta, Parul, 2015-11-30
created	[InstanceEdit:1164949] Wu, Guanming, 2010-12-11
crossReference	[DatabaseIdentifier:1133602] RiceCyc:PWY-3385
dbId	1119556
displayName	Choline biosynthesis I
edited	[InstanceEdit:8854111] Gupta, Parul, 2015-11-30
eventOf	[Pathway:R-OSA-3906998] Fatty acid and lipid metabolism - Oryza sativa
followingEvent	[Pathway:R-OSA-1119276] Choline biosynthesis III - Oryza sativa [Reaction:R-OSA-1121268] phosphoryl-choline+CTP->CDP-choline+diphosphate - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:12110] choline biosynthetic process
hasDiagram	true
hasEvent	[Reaction:R-OSA-1121500] L-serine->ethanolamine+CO2 - Oryza sativa [Reaction:R-OSA-1121304] ethanolamine+ATP->phosphoryl-ethanolamine+ADP - Oryza sativa [Reaction:R-OSA-1120966] phosphoryl-ethanolamine+SAM->N-methylethanolamine phosphate+SAH - Oryza sativa [Reaction:R-OSA-1120591] N-methylethanolamine phosphate+SAM->N-dimethylethanolamine phosphate+SAH - Oryza sativa [Reaction:R-OSA-1121375] N-dimethylethanolamine phosphate+SAM->phosphoryl-choline+SAH - Oryza sativa [Reaction:R-OSA-1121235] phosphoryl-choline+H2O->choline+phosphate - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:5308500] Enhanced synthesis of choline and glycine betaine in transgenic tobacco plants that overexpress phosphoethanolamine N-methyltransferase [LiteratureReference:5308535] Choline Synthesis in Spinach in Relation to Salt Stress [LiteratureReference:8854125] Metabolic engineering for betaine accumulation in microbes and plants [LiteratureReference:8854124] The Choline/Ethanolamine Kinase Family in Arabidopsis: Essential Role of CEK4 in Phospholipid Biosynthesis and Embryo Development
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Choline biosynthesis I pathway100849
orthologousEvent	[Pathway:R-QSU-1119556] Choline biosynthesis I - Quercus suber [Pathway:R-ATA-1119556] Choline biosynthesis I - Aegilops tauschii [Pathway:R-BVU-1119556] Choline biosynthesis I - Beta vulgaris [Pathway:R-AUM-1119556] Choline biosynthesis I - Aegilops umbellulata [Pathway:R-ACO-1119556] Choline biosynthesis I - Ananas comosus [Pathway:R-PTI-1119556] Choline biosynthesis I - Populus trichocarpa [Pathway:R-NAT-1119556] Choline biosynthesis I - Nicotiana attenuata [Pathway:R-SIN-1119556] Choline biosynthesis I - Sesamum indicum [Pathway:R-HVU-1119556] Choline biosynthesis I - Hordeum vulgare [Pathway:R-OME-1119556] Choline biosynthesis I - Oryza meridionalis [Pathway:R-FEX-1119556] Choline biosynthesis I - Fraxinus excelsior (European ash) [Pathway:R-OPU-1119556] Choline biosynthesis I - Oryza punctata [Pathway:R-MTR-1119556] Choline biosynthesis I - Medicago truncatula [Pathway:R-TTI-1119556] Choline biosynthesis I - Triticum timopheevii subsp. timopheevii [Pathway:R-VVN-1119556] Choline biosynthesis I - Vitis vinifera [Pathway:R-OGL-1119556] Choline biosynthesis I - Oryza glaberrima [Pathway:R-VAN-1119556] Choline biosynthesis I - Vigna angularis [Pathway:R-CAN-1119556] Choline biosynthesis I - Capsicum annuum [Pathway:R-MES-1119556] Choline biosynthesis I - Manihot esculenta [Pathway:R-COL-1119556] Choline biosynthesis I - Corchorus olitorius [Pathway:R-VUN-1119556] Choline biosynthesis I - Vigna unguiculata [Pathway:R-CST-1119556] Choline biosynthesis I - Camelina sativa [Pathway:R-FVE-1119556] Choline biosynthesis I - Fragaria vesca [Pathway:R-ORU-1119556] Choline biosynthesis I - Oryza rufipogon [Pathway:R-OOF-1119556] Choline biosynthesis I - Oryza officinalis [Pathway:R-PTA-1119556] Choline biosynthesis I - Pinus taeda [Pathway:R-AHY-1119556] Choline biosynthesis I - Arachis hypogaea [Pathway:R-AHA-1119556] Choline biosynthesis I - Arabidopsis halleri [Pathway:R-ECU-1119556] Choline biosynthesis I - Eragrostis curvula [Pathway:R-NCO-1119556] Choline biosynthesis I - Nymphaea colorata [Pathway:R-BDI-1119556] Choline biosynthesis I - Brachypodium distachyon [Pathway:R-PSO-1119556] Choline biosynthesis I - Papaver somniferum [Pathway:R-EGR-1119556] Choline biosynthesis I - Eucalyptus grandis [Pathway:R-OGR-1119556] Choline biosynthesis I - Oryza meyeriana var. granulata [Pathway:R-JCU-1119556] Choline biosynthesis I - Jatropha curcas [Pathway:R-CSK-1119556] Choline biosynthesis I - Cannabis sativa subsp. indica [Pathway:R-CCR-1119556] Choline biosynthesis I - Chondrus crispus [Pathway:R-BRA-1119556] Choline biosynthesis I - Brassica rapa [Pathway:R-BJU-1119556] Choline biosynthesis I - Brassica juncea [Pathway:R-CCA-1119556] Choline biosynthesis I - Cajanus cajan [Pathway:R-ADU-1119556] Choline biosynthesis I - Arachis duranensis [Pathway:R-CCD-1119556] Choline biosynthesis I - Cynara cardunculus var. scolymus [Pathway:R-OSI-1119556] Choline biosynthesis I - Oryza sativa Indica Group [Pathway:R-CQI-1119556] Choline biosynthesis I - Chenopodium quinoa [Pathway:R-TTU-1119556] Choline biosynthesis I - Triticum turgidum [Pathway:R-SIT-1119556] Choline biosynthesis I - Setaria italica [Pathway:R-ETE-1119556] Choline biosynthesis I - Eragrostis tef [Pathway:R-JRE-1119556] Choline biosynthesis I - Juglans regia [Pathway:R-STU-1119556] Choline biosynthesis I - Solanum tuberosum [Pathway:R-PDA-1119556] Choline biosynthesis I - Phoenix dactylifera [Pathway:R-GMA-1119556] Choline biosynthesis I - Glycine max [Pathway:R-AIP-1119556] Choline biosynthesis I - Arachis ipaensis [Pathway:R-PVE-1119556] Choline biosynthesis I - Pistacia vera [Pathway:R-OBR-1119556] Choline biosynthesis I - Oryza brachyantha [Pathway:R-HAN-1119556] Choline biosynthesis I - Helianthus annuus [Pathway:R-PAV-1119556] Choline biosynthesis I - Prunus avium [Pathway:R-TPR-1119556] Choline biosynthesis I - Trifolium pratense [Pathway:R-ATR-1119556] Choline biosynthesis I - Amborella trichopoda [Pathway:R-CCN-1119556] Choline biosynthesis I - Coffea canephora [Pathway:R-OLO-1119556] Choline biosynthesis I - Oryza longistaminata [Pathway:R-TAE-1119556] Choline biosynthesis I - Triticum aestivum [Pathway:R-PPE-1119556] Choline biosynthesis I - Prunus persica [Pathway:R-MPO-1119556] Choline biosynthesis I - Marchantia polymorpha [Pathway:R-SLY-1119556] Choline biosynthesis I - Solanum lycopersicum [Pathway:R-TCA-1119556] Choline biosynthesis I - Theobroma cacao [Pathway:R-LSA-1119556] Choline biosynthesis I - Lactuca sativa [Pathway:R-SHI-1119556] Choline biosynthesis I - Salvia hispanica [Pathway:R-RCH-1119556] Choline biosynthesis I - Rosa chinensis [Pathway:R-OBA-1119556] Choline biosynthesis I - Oryza barthii [Pathway:R-AOF-1119556] Choline biosynthesis I - Asparagus officinalis [Pathway:R-ZJA-1119556] Choline biosynthesis I - Zoysia japonica [Pathway:R-PHH-1119556] Choline biosynthesis I - Panicum hallii var. hallii ("HAL2") [Pathway:R-SMO-1119556] Choline biosynthesis I - Selaginella moellendorffii [Pathway:R-ZMY-1119556] Choline biosynthesis I - Zea mays ver5 [Pathway:R-TUR-1119556] Choline biosynthesis I - Triticum urartu [Pathway:R-CBA-1119556] Choline biosynthesis I - Chara braunii [Pathway:R-CCL-1119556] Choline biosynthesis I - Citrus clementina [Pathway:R-ASA-1119556] Choline biosynthesis I - Avena sativa [Pathway:R-NNU-1119556] Choline biosynthesis I - Nelumbo nucifera [Pathway:R-ALY-1119556] Choline biosynthesis I - Arabidopsis lyrata [Pathway:R-ACH-1119556] Choline biosynthesis I - Actinidia chinensis [Pathway:R-CSA-1119556] Choline biosynthesis I - Cucumis sativus [Pathway:R-CAR-1119556] Choline biosynthesis I - Cicer arietinum [Pathway:R-HLP-1119556] Choline biosynthesis I - Humulus lupulus var. lupulus [Pathway:R-SVI-1119556] Choline biosynthesis I - Setaria viridis [Pathway:R-LPR-1119556] Choline biosynthesis I - Lolium perenne [Pathway:R-ITR-1119556] Choline biosynthesis I - Ipomoea triloba [Pathway:R-QLO-1119556] Choline biosynthesis I - Quercus lobata [Pathway:R-DRO-1119556] Choline biosynthesis I - Dioscorea rotundata [Pathway:R-CSI-1119556] Choline biosynthesis I - Citrus sinensis [Pathway:R-PPA-1119556] Choline biosynthesis I - Physcomitrella patens [Pathway:R-BOL-1119556] Choline biosynthesis I - Brassica oleracea [Pathway:R-CML-1119556] Choline biosynthesis I - Cucumis melo [Pathway:R-VFA-1119556] Choline biosynthesis I - Vicia faba var. faba [Pathway:R-CRU-1119556] Choline biosynthesis I - Capsella rubella [Pathway:R-ECG-1119556] Choline biosynthesis I - Echinochloa crus-galli [Pathway:R-OEU-1119556] Choline biosynthesis I - Olea europaea [Pathway:R-PSA-1119556] Choline biosynthesis I - Pisum sativum [Pathway:R-CRE-1119556] Choline biosynthesis I - Chlamydomonas reinhardtii [Pathway:R-LAN-1119556] Choline biosynthesis I - Lupinus angustifolius [Pathway:R-FCR-1119556] Choline biosynthesis I - Ficus carica [Pathway:R-OES-1119556] Choline biosynthesis I - Olea europaea var. sylvestris [Pathway:R-CCI-1119556] Choline biosynthesis I - Corymbia citriodora [Pathway:R-OMI-1119556] Choline biosynthesis I - Oryza minuta [Pathway:R-MGU-1119556] Choline biosynthesis I - Erythranthe guttata [Pathway:R-OGU-1119556] Choline biosynthesis I - Oryza glumaepatula [Pathway:R-GSO-1119556] Choline biosynthesis I - Glycine soja [Pathway:R-PVU-1119556] Choline biosynthesis I - Phaseolus vulgaris [Pathway:R-PHA-1119556] Choline biosynthesis I - Panicum hallii ("FIL2") [Pathway:R-ZMA-1119556] Choline biosynthesis I - Zea mays [Pathway:R-PED-1119556] Choline biosynthesis I - Phyllostachys edulis [Pathway:R-TSP-1119556] Choline biosynthesis I - Triticum spelta subsp. spelta [Pathway:R-MDO-1119556] Choline biosynthesis I - Malus domestica [Pathway:R-ONI-1119556] Choline biosynthesis I - Oryza nivara [Pathway:R-CSC-1119556] Choline biosynthesis I - Cannabis sativa [Pathway:R-GSU-1119556] Choline biosynthesis I - Galdieria sulphuraria [Pathway:R-OAU-1119556] Choline biosynthesis I - Oryza australiensis [Pathway:R-CLA-1119556] Choline biosynthesis I - Citrullus lanatus [Pathway:R-SCR-1119556] Choline biosynthesis I - Secale cereale [Pathway:R-CCP-1119556] Choline biosynthesis I - Corchorus capsularis [Pathway:R-LST-1119556] Choline biosynthesis I - Lathyrus sativus [Pathway:R-DEX-1119556] Choline biosynthesis I - Digitaria exilis [Pathway:R-BNA-1119556] Choline biosynthesis I - Brassica napus [Pathway:R-MAC-1119556] Choline biosynthesis I - Musa acuminata [Pathway:R-ATH-1119556] Choline biosynthesis I - Arabidopsis thaliana [Pathway:R-TDI-1119556] Choline biosynthesis I - Triticum dicoccoides [Pathway:R-LPE-1119556] Choline biosynthesis I - Leersia perrieri [Pathway:R-GRA-1119556] Choline biosynthesis I - Gossypium raimondii [Pathway:R-SBI-1119556] Choline biosynthesis I - Sorghum bicolor [Pathway:R-PAB-1119556] Choline biosynthesis I - Picea abies [Pathway:R-VRA-1119556] Choline biosynthesis I - Vigna radiata [Pathway:R-SSP-1119556] Choline biosynthesis I - Saccharum spontaneum [Pathway:R-DCA-1119556] Choline biosynthesis I - Daucus carota
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-1119556
summation	[Summation:8854122] Choline acts as a precursor for an osmoprotectant glycine be... [Summation:1119236] Data source: RiceCyc

Referrals

(hasEvent)	[Pathway:R-OSA-3906998] Fatty acid and lipid metabolism - Oryza sativa
(precedingEvent)	[Pathway:R-OSA-1119276] Choline biosynthesis III - Oryza sativa [Reaction:R-OSA-1121268] phosphoryl-choline+CTP->CDP-choline+diphosphate - Oryza sativa