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Photorespiration

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authored	[InstanceEdit:8854446] Gupta, Parul, 2016-01-27
compartment	[Compartment:17951] peroxisomal matrix [Compartment:5460] mitochondrial matrix [Compartment:858] chloroplast
created	[InstanceEdit:1164949] Wu, Guanming, 2010-12-11
crossReference	[DatabaseIdentifier:1153079] RiceCyc:PWY-181
dbId	1119312
displayName	Photorespiration
eventOf	[TopLevelPathway:R-OSA-2744345] Metabolism and regulation - Oryza sativa
goBiologicalProcess	[GO_BiologicalProcess:5510] photorespiration
hasDiagram	true
hasEvent	[Reaction:R-OSA-8987489] 2-phosphoglycolate+H2O -> glycolate+phosphate - Oryza sativa [Reaction:R-OSA-1120095] D-ribulose-1,5-bisphosphate+O2 -> 2-phosphoglycolate+3-phosphoglycerate - Oryza sativa [Reaction:R-OSA-8987526] glycerate+ATP -> 3-phosphoglycerate+ADP - Oryza sativa [Reaction:R-OSA-8987454] glycine+5,10-CH2-THF -> serine+THF - Oryza sativa [Reaction:R-OSA-8987464] glycine+NAD+THF -> 5,10-ch2-THF+CO2+NH3+NADH - Oryza sativa [Reaction:R-OSA-8987525] glycolate+O2 -> glyoxylate+H2O2 - Oryza sativa [Reaction:R-OSA-8987511] glyoxylate+glutamate -> glycine+alpha-ketoglutarate - Oryza sativa [Reaction:R-OSA-8987458] hydroxypyruvate+NADH -> glycerate+NAD+ - Oryza sativa [Reaction:R-OSA-8987479] serine+glyoxylate -> glycine+hydroxypyruvate - Oryza sativa [Reaction:R-OSA-8987487] transportation of glycerate from peroxisome to chloroplast - Oryza sativa [Reaction:R-OSA-8987583] transportation of glycine from peroxisome to mitochondria - Oryza sativa [Reaction:R-OSA-8987470] transportation of glycolate from chloroplast to peroxisome - Oryza sativa [Reaction:R-OSA-8987573] transportation of serine from mitochondria to peroxisome - Oryza sativa
isInDisease	false
isInferred	false
literatureReference	[LiteratureReference:8987465] Availability of Rubisco small subunit up-regulates the transcript levels of large subunit for stoichiometric assembly of its holoenzyme in rice [LiteratureReference:8987474] Association-Dissociation of Glycolate Oxidase with Catalase in Rice: A Potential Switch to Modulate Intracellular H2O2 Levels [LiteratureReference:8987520] Characterization and molecular cloning of a serine hydroxymethyltransferase 1 (OsSHM1) in rice [LiteratureReference:8987581] Distinct photorespiratory reactions are preferentially catalyzed by glutamate:glyoxylate and serine:glyoxylate aminotransferases in rice [LiteratureReference:8987463] Glutamate:glyoxylate aminotransferase modulates amino acid content during photorespiration [LiteratureReference:8987480] Glycolate oxidase isozymes are coordinately controlled by GLO1 and GLO4 in rice [LiteratureReference:8987556] Glyoxylate rather than ascorbate is an efficient precursor for oxalate biosynthesis in rice [LiteratureReference:8987559] Glyoxylate rather than ascorbate is an efficient precursor for oxalate biosynthesis in rice [LiteratureReference:8987545] Inducible antisense suppression of glycolate oxidase reveals its strong regulation over photosynthesis in rice [LiteratureReference:8987567] Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice [LiteratureReference:8987496] Overexpression of Glycolate Oxidase Confers Improved Photosynthesis under High Light and High Temperature in Rice [LiteratureReference:8987452] Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice [LiteratureReference:8987580] Rubisco content and photosynthesis of leaves at different positions in transgenic rice with an overexpression of RBCS [LiteratureReference:8987472] Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice [LiteratureReference:8987510] Translational downregulation of RBCL is operative in the coordinated expression of Rubisco genes in senescent leaves in rice [LiteratureReference:8987478] Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice [LiteratureReference:8987547] The emerging role of photorespiration and non-photorespiratory peroxisomal metabolism in pathogen defence
modified	[InstanceEdit:11540225] Elser, Justin, 2025-03-27
name	Photorespiration C2 photorespiratory carbon oxidation cycle PCO cycle pathway98880 photorespiration
orthologousEvent	[Pathway:R-VAN-1119312] Photorespiration - Vigna angularis [Pathway:R-CCP-1119312] Photorespiration - Corchorus capsularis [Pathway:R-OAU-1119312] Photorespiration - Oryza australiensis [Pathway:R-BDI-1119312] Photorespiration - Brachypodium distachyon [Pathway:R-ASA-1119312] Photorespiration - Avena sativa [Pathway:R-TDI-1119312] Photorespiration - Triticum dicoccoides [Pathway:R-CCL-1119312] Photorespiration - Citrus clementina [Pathway:R-ALY-1119312] Photorespiration - Arabidopsis lyrata [Pathway:R-MES-1119312] Photorespiration - Manihot esculenta [Pathway:R-VFA-1119312] Photorespiration - Vicia faba var. faba [Pathway:R-ECU-1119312] Photorespiration - Eragrostis curvula [Pathway:R-PTI-1119312] Photorespiration - Populus trichocarpa [Pathway:R-MAC-1119312] Photorespiration - Musa acuminata [Pathway:R-CSI-1119312] Photorespiration - Citrus sinensis [Pathway:R-ZMY-1119312] Photorespiration - Zea mays ver5 [Pathway:R-CRE-1119312] Photorespiration - Chlamydomonas reinhardtii [Pathway:R-BJU-1119312] Photorespiration - Brassica juncea [Pathway:R-ADU-1119312] Photorespiration - Arachis duranensis [Pathway:R-PHA-1119312] Photorespiration - Panicum hallii ("FIL2") [Pathway:R-HAN-1119312] Photorespiration - Helianthus annuus [Pathway:R-CCA-1119312] Photorespiration - Cajanus cajan [Pathway:R-LAN-1119312] Photorespiration - Lupinus angustifolius [Pathway:R-OES-1119312] Photorespiration - Olea europaea var. sylvestris [Pathway:R-PVU-1119312] Photorespiration - Phaseolus vulgaris [Pathway:R-HVU-1119312] Photorespiration - Hordeum vulgare [Pathway:R-PED-1119312] Photorespiration - Phyllostachys edulis [Pathway:R-PSO-1119312] Photorespiration - Papaver somniferum [Pathway:R-STU-1119312] Photorespiration - Solanum tuberosum [Pathway:R-FCR-1119312] Photorespiration - Ficus carica [Pathway:R-QSU-1119312] Photorespiration - Quercus suber [Pathway:R-JCU-1119312] Photorespiration - Jatropha curcas [Pathway:R-OMI-1119312] Photorespiration - Oryza minuta [Pathway:R-CST-1119312] Photorespiration - Camelina sativa [Pathway:R-SPC-1119312] Photorespiration - Synechocystis sp. PCC 6803 [Pathway:R-OPU-1119312] Photorespiration - Oryza punctata [Pathway:R-AUM-1119312] Photorespiration - Aegilops umbellulata [Pathway:R-PTA-1119312] Photorespiration - Pinus taeda [Pathway:R-COL-1119312] Photorespiration - Corchorus olitorius [Pathway:R-QLO-1119312] Photorespiration - Quercus lobata [Pathway:R-PAV-1119312] Photorespiration - Prunus avium [Pathway:R-PPE-1119312] Photorespiration - Prunus persica [Pathway:R-LSA-1119312] Photorespiration - Lactuca sativa [Pathway:R-CCR-1119312] Photorespiration - Chondrus crispus [Pathway:R-PAB-1119312] Photorespiration - Picea abies [Pathway:R-PPA-1119312] Photorespiration - Physcomitrella patens [Pathway:R-DEX-1119312] Photorespiration - Digitaria exilis [Pathway:R-BOL-1119312] Photorespiration - Brassica oleracea [Pathway:R-OOF-1119312] Photorespiration - Oryza officinalis [Pathway:R-ORU-1119312] Photorespiration - Oryza rufipogon [Pathway:R-MDO-1119312] Photorespiration - Malus domestica [Pathway:R-ONI-1119312] Photorespiration - Oryza nivara [Pathway:R-LST-1119312] Photorespiration - Lathyrus sativus [Pathway:R-TCA-1119312] Photorespiration - Theobroma cacao [Pathway:R-AHY-1119312] Photorespiration - Arachis hypogaea [Pathway:R-CCI-1119312] Photorespiration - Corymbia citriodora [Pathway:R-FEX-1119312] Photorespiration - Fraxinus excelsior (European ash) [Pathway:R-SBI-1119312] Photorespiration - Sorghum bicolor [Pathway:R-NAT-1119312] Photorespiration - Nicotiana attenuata [Pathway:R-MGU-1119312] Photorespiration - Erythranthe guttata [Pathway:R-JRE-1119312] Photorespiration - Juglans regia [Pathway:R-SIN-1119312] Photorespiration - Sesamum indicum [Pathway:R-ACH-1119312] Photorespiration - Actinidia chinensis [Pathway:R-CSA-1119312] Photorespiration - Cucumis sativus [Pathway:R-HLH-1119312] Photorespiration - Humulus lupulus [Pathway:R-OGL-1119312] Photorespiration - Oryza glaberrima [Pathway:R-OGU-1119312] Photorespiration - Oryza glumaepatula [Pathway:R-VUN-1119312] Photorespiration - Vigna unguiculata [Pathway:R-RCH-1119312] Photorespiration - Rosa chinensis [Pathway:R-CME-1119312] Photorespiration - Cyanidioschyzon merolae [Pathway:R-ITR-1119312] Photorespiration - Ipomoea triloba [Pathway:R-AHA-1119312] Photorespiration - Arabidopsis halleri [Pathway:R-MPO-1119312] Photorespiration - Marchantia polymorpha [Pathway:R-AIP-1119312] Photorespiration - Arachis ipaensis [Pathway:R-PDA-1119312] Photorespiration - Phoenix dactylifera [Pathway:R-CML-1119312] Photorespiration - Cucumis melo [Pathway:R-BRA-1119312] Photorespiration - Brassica rapa [Pathway:R-NNU-1119312] Photorespiration - Nelumbo nucifera [Pathway:R-EGR-1119312] Photorespiration - Eucalyptus grandis [Pathway:R-CSK-1119312] Photorespiration - Cannabis sativa subsp. indica [Pathway:R-GRA-1119312] Photorespiration - Gossypium raimondii [Pathway:R-NCO-1119312] Photorespiration - Nymphaea colorata [Pathway:R-BVU-1119312] Photorespiration - Beta vulgaris [Pathway:R-TPR-1119312] Photorespiration - Trifolium pratense [Pathway:R-CAR-1119312] Photorespiration - Cicer arietinum [Pathway:R-ZMA-1119312] Photorespiration - Zea mays [Pathway:R-ATA-1119312] Photorespiration - Aegilops tauschii [Pathway:R-OME-1119312] Photorespiration - Oryza meridionalis [Pathway:R-GMA-1119312] Photorespiration - Glycine max [Pathway:R-PVE-1119312] Photorespiration - Pistacia vera [Pathway:R-ACO-1119312] Photorespiration - Ananas comosus [Pathway:R-AOF-1119312] Photorespiration - Asparagus officinalis [Pathway:R-SIT-1119312] Photorespiration - Setaria italica [Pathway:R-OGR-1119312] Photorespiration - Oryza meyeriana var. granulata [Pathway:R-CRU-1119312] Photorespiration - Capsella rubella [Pathway:R-VVN-1119312] Photorespiration - Vitis vinifera [Pathway:R-MTR-1119312] Photorespiration - Medicago truncatula [Pathway:R-TSP-1119312] Photorespiration - Triticum spelta subsp. spelta [Pathway:R-LPR-1119312] Photorespiration - Lolium perenne [Pathway:R-OEU-1119312] Photorespiration - Olea europaea [Pathway:R-TTI-1119312] Photorespiration - Triticum timopheevii subsp. timopheevii [Pathway:R-TUR-1119312] Photorespiration - Triticum urartu [Pathway:R-HLP-1119312] Photorespiration - Humulus lupulus var. lupulus [Pathway:R-CCD-1119312] Photorespiration - Cynara cardunculus var. scolymus [Pathway:R-PSA-1119312] Photorespiration - Pisum sativum [Pathway:R-CBA-1119312] Photorespiration - Chara braunii [Pathway:R-FVE-1119312] Photorespiration - Fragaria vesca [Pathway:R-OKA-1119312] Photorespiration - Oryza sativa aus subgroup [Pathway:R-SVI-1119312] Photorespiration - Setaria viridis [Pathway:R-CSC-1119312] Photorespiration - Cannabis sativa [Pathway:R-ETE-1119312] Photorespiration - Eragrostis tef [Pathway:R-CLA-1119312] Photorespiration - Citrullus lanatus [Pathway:R-ATH-1119312] Photorespiration - Arabidopsis thaliana [Pathway:R-DRO-1119312] Photorespiration - Dioscorea rotundata [Pathway:R-TAE-1119312] Photorespiration - Triticum aestivum [Pathway:R-OSI-1119312] Photorespiration - Oryza sativa Indica Group [Pathway:R-ATR-1119312] Photorespiration - Amborella trichopoda [Pathway:R-CQI-1119312] Photorespiration - Chenopodium quinoa [Pathway:R-ECG-1119312] Photorespiration - Echinochloa crus-galli [Pathway:R-BNA-1119312] Photorespiration - Brassica napus [Pathway:R-OLO-1119312] Photorespiration - Oryza longistaminata [Pathway:R-SMO-1119312] Photorespiration - Selaginella moellendorffii [Pathway:R-ZJA-1119312] Photorespiration - Zoysia japonica [Pathway:R-DCA-1119312] Photorespiration - Daucus carota [Pathway:R-SSP-1119312] Photorespiration - Saccharum spontaneum [Pathway:R-OBA-1119312] Photorespiration - Oryza barthii [Pathway:R-GSO-1119312] Photorespiration - Glycine soja [Pathway:R-CAN-1119312] Photorespiration - Capsicum annuum [Pathway:R-SLY-1119312] Photorespiration - Solanum lycopersicum [Pathway:R-OLU-1119312] Photorespiration - Ostreococcus lucimarinus [Pathway:R-OBR-1119312] Photorespiration - Oryza brachyantha [Pathway:R-VRA-1119312] Photorespiration - Vigna radiata [Pathway:R-PHH-1119312] Photorespiration - Panicum hallii var. hallii ("HAL2") [Pathway:R-SHI-1119312] Photorespiration - Salvia hispanica [Pathway:R-LPE-1119312] Photorespiration - Leersia perrieri [Pathway:R-GSU-1119312] Photorespiration - Galdieria sulphuraria [Pathway:R-SCR-1119312] Photorespiration - Secale cereale [Pathway:R-TTU-1119312] Photorespiration - Triticum turgidum [Pathway:R-CCN-1119312] Photorespiration - Coffea canephora
revised	[InstanceEdit:9682112] Gupta, Parul, 2020-04-07
schemaClass	Pathway
species	[Species:186860] Oryza sativa
stId	R-OSA-1119312
summation	[Summation:8987501] Photorespiration involves three types of organelles: chlorop...

Referrals

(hasEvent)

[TopLevelPathway:R-OSA-2744345] Metabolism and regulation - Oryza sativa