Plant Reactome Pathway Database

  • About
    • What is Plant Reactome ?
    • Team
    • Scientific Advisory Board
    • License Agreement
    • Disclaimer
    • Staff
  • Content
    • Data Schema
    • Release Summary
  • Docs
    • User Guide
    • Developer's Zone
      • Graph Database
      • Content Service
      • Pathways Overview
      • Pathway Diagrams
    • Data Model
    • Computational Inference
    • Linking to Us
    • Citing us
  • Tools
    • Pathway Browser
    • Analyze Data
    • Species Comparison
    • Content Service
  • Community
    • Outreach
    • Events
    • Training
    • Publications
    • Partners
  • Download

 Plant Reactome Pathway Database

  • About
    • What is Plant Reactome ?
    • Team
    • Scientific Advisory Board
    • License Agreement
    • Disclaimer
    • Staff
  • Content
    • Data Schema
    • Release Summary
  • Docs
    • User Guide
    • Developer's Zone
      • Graph Database
      • Content Service
      • Pathways Overview
      • Pathway Diagrams
    • Data Model
    • Computational Inference
    • Linking to Us
    • Citing us
  • Tools
    • Pathway Browser
    • Analyze Data
    • Species Comparison
    • Content Service
  • Community
    • Outreach
    • Events
    • Training
    • Publications
    • Partners
  • Download
Schema > Pathway > Entries

Xylose degradation

Go to Details
compartment
  • [Compartment:70101] cytosol
created [InstanceEdit:10617379] Elser, Justin, 2025-03-25
dbId 10626114
displayName Xylose degradation
eventOf
  • [Pathway:R-CSA-2883407] Carbohydrate metabolism - Cucumis sativus
evidenceType [EvidenceType:9939645] inferred by electronic annotation
hasDiagram true
hasEvent
  • [Reaction:R-CSA-1121296] Xylose isomerase - Cucumis sativus
  • [Reaction:R-CSA-1121240] Xylulokinase - Cucumis sativus
inferredFrom
  • [Pathway:R-OSA-1119451] Xylose degradation - Oryza sativa
isInDisease false
isInferred true
name
  • Xylose degradation
  • Xylose catabolism
  • pathway99348
releaseDate 2025-02-15
schemaClass Pathway
species
  • [Species:9029938] Cucumis sativus
stId R-CSA-1119451
summation
  • [Summation:9939644] This event has been computationally inferred from an event that has been demonstrated in another species.

    The inference is based on the homology mappings from Ensembl Compara. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 1% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

    More details and caveats of the event inference in Reactome.

Referrals

(hasEvent)
  • [Pathway:R-CSA-2883407] Carbohydrate metabolism - Cucumis sativus
(inferredTo)
  • [Pathway:R-OSA-1119451] Xylose degradation - Oryza sativa
  • About
    • What is Plant Reactome ?
    • Team
    • Scientific Advisory Board
    • License Agreement
    • Disclaimer
    • Staff
  • Content
    • Data Schema
    • Release Summary
  • Docs
    • User Guide
    • Developer's Zone
    • Data Model
    • Computational Inference
    • Linking to Us
    • Citing us
  • Tools
    • Pathway Browser
    • Analyze Data
    • Species Comparison
    • Content Service
  • Community
    • Outreach
    • Events
    • Training
    • Publications
    • Partners
  • Download

© 2019 Gramene - Plant Reactome