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About
What is Plant Reactome ?
Team
Scientific Advisory Board
License Agreement
Disclaimer
Staff
Content
Data Schema
Release Summary
Docs
User Guide
Developer's Zone
Graph Database
Content Service
Pathways Overview
Pathway Diagrams
Data Model
Computational Inference
Linking to Us
Citing us
Tools
Pathway Browser
Analyze Data
Species Comparison
Content Service
Community
Outreach
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Training
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PfrA
Stable Identifier
R-OSA-8933843
Type
Protein [EntityWithAccessionedSequence]
Species
Oryza sativa
Synonyms
PhyA
Locations in the PathwayBrowser
Expand all
Circadian rhythm (Oryza sativa)
Formation of PIF3:PhyA complex unde red light (Oryza sativa)
PIF3:PHYA [nucleoplasm] (Oryza sativa)
PfrA [nucleoplasm] (Oryza sativa)
PfrA [nucleoplasm] (Oryza sativa)
translocation of PHYA from cytosol to nucleoplasm (Oryza sativa)
PfrA [nucleoplasm] (Oryza sativa)
External Reference Information
External Reference
UniProt:Q10DU0 PHYA
Gene Names
PHYA, PHY18, Os03g0719800, LOC_Os03g51030, B1377B10.8, OAJNBa0031O09.11, OsJ_011877
Chain
chain:1-1128
Participant Of
hasComponent
PIF3:PHYA [nucleoplasm]
input
Formation of PIF3:PhyA complex unde red light
output
translocation of PHYA from cytosol to nucleoplasm
Other forms of this molecule
PrA [cytosol]
PfrA [cytosol]
Inferred To
Tp57577_TGAC_v2_gene34894 [nucleoplasm] (Trifolium pratense)
Vradi08g11890 [nucleoplasm] (Vigna radiata)
AUR62003557 [nucleoplasm] (Chenopodium quinoa)
SORBI_3001G111500 [nucleoplasm] (Sorghum bicolor)
AMTR_s00045p00153850 [nucleoplasm] (Amborella trichopoda)
GSBRNA2T00156170001 [nucleoplasm] (Brassica napus)
RchiOBHm_Chr3g0459021 [nucleoplasm] (Rosa chinensis)
Mp2g16090 [nucleoplasm] (Marchantia polymorpha)
OB03G39220 [nucleoplasm] (Oryza brachyantha)
PHAVU_001G221100g [nucleoplasm] (Phaseolus vulgaris)
SIN_1022818 [nucleoplasm] (Sesamum indicum)
HanXRQr2_Chr06g0268191 [nucleoplasm] (Helianthus annuus)
LOC114372607 [nucleoplasm] (Glycine soja)
evm.TU.06.1809 [nucleoplasm] (Cannabis sativa)
HanXRQr2_Chr04g0163201 [nucleoplasm] (Helianthus annuus)
LOC114403423 [nucleoplasm] (Glycine soja)
Solyc10g044670.2 [nucleoplasm] (Solanum lycopersicum)
TanjilG_02691 [nucleoplasm] (Lupinus angustifolius)
GSCOC_T00003854001 [nucleoplasm] (Coffea canephora)
Tritim_EIv0.3_0694320 [nucleoplasm] (Triticum timopheevii subsp. timopheevii)
GLYMA_20G090000 [nucleoplasm] (Glycine max)
TraesCS4B02G052000 [nucleoplasm] (Triticum aestivum)
Csa_6G403570 [nucleoplasm] (Cucumis sativus)
Psat6g156640 [nucleoplasm] (Pisum sativum)
OE9A088872 [nucleoplasm] (Olea europaea)
OE9A088872 [nucleoplasm] (Olea europaea var. sylvestris)
A4A49_01197 [nucleoplasm] (Nicotiana attenuata)
FRAEX38873_v2_000140050 [nucleoplasm] (Fraxinus excelsior (European ash))
KYUSg_chr4.12171 [nucleoplasm] (Lolium perenne)
Vfaba.Hedin2.R1.3g094120 [nucleoplasm] (Vicia faba var. faba)
Zjn_sc00013.1.g04550.1.sm.mkhc [nucleoplasm] (Zoysia japonica)
C.cajan_03784 [nucleoplasm] (Cajanus cajan)
KYUSg_chr4.46912 [nucleoplasm] (Lolium perenne)
Bo8g111060 [nucleoplasm] (Brassica oleracea)
ONIVA03G33670 [nucleoplasm] (Oryza nivara)
LPERR03G26810 [nucleoplasm] (Leersia perrieri)
Vigun07g133700.v1.2 [nucleoplasm] (Vigna unguiculata)
BAA18732 [nucleoplasm] (Synechocystis sp. PCC 6803)
TRIDC4AG041080 [nucleoplasm] (Triticum dicoccoides)
scaffold3.1324 [nucleoplasm] (Echinochloa crus-galli)
Tritim_EIv0.3_0833000 [nucleoplasm] (Triticum timopheevii subsp. timopheevii)
BRADI_1g10510v3 [nucleoplasm] (Brachypodium distachyon)
PRUPE_6G302500 [nucleoplasm] (Prunus persica)
CBR_g52258 [nucleoplasm] (Chara braunii)
CEY00_Acc24301 [nucleoplasm] (Actinidia chinensis)
LR48_Vigan03g269900 [nucleoplasm] (Vigna angularis)
Pp3c25_2610 [nucleoplasm] (Physcomitrella patens)
g46383 [nucleoplasm] (Salvia hispanica)
HanXRQr2_Chr06g0268241 [nucleoplasm] (Helianthus annuus)
TuG1812G0400000490.01 [nucleoplasm] (Triticum urartu)
BjuA06g36490S [nucleoplasm] (Brassica juncea)
OE9A114644 [nucleoplasm] (Olea europaea)
OE9A114644 [nucleoplasm] (Olea europaea var. sylvestris)
PGSC0003DMG400015766 [nucleoplasm] (Solanum tuberosum)
TCM_047056 [nucleoplasm] (Theobroma cacao)
EVM0003931 [nucleoplasm] (Pistacia vera)
C.cajan_10650 [nucleoplasm] (Cajanus cajan)
Dexi2B01G0010360 [nucleoplasm] (Digitaria exilis)
DCAR_003036 [nucleoplasm] (Daucus carota)
KYUSg_chr5.18435 [nucleoplasm] (Lolium perenne)
Pav_sc0001938.1_g560.1.mk [nucleoplasm] (Prunus avium)
Zm00001eb055460 [nucleoplasm] (Zea mays ver5)
g28833 [nucleoplasm] (Arabidopsis halleri)
Zm00001d013402 [nucleoplasm] (Zea mays)
BVRB_6g132500 [nucleoplasm] (Beta vulgaris)
Csa17g013040 [nucleoplasm] (Camelina sativa)
MD12G0163400 [nucleoplasm] (Malus domestica)
MD04G0147300 [nucleoplasm] (Malus domestica)
gene-LATHSAT_LOCUS25157 [nucleoplasm] (Lathyrus sativus)
SECCE4Rv1G0220280 [nucleoplasm] (Secale cereale)
OBART03G32160 [nucleoplasm] (Oryza barthii)
OGLUM02G34890 [nucleoplasm] (Oryza glumaepatula)
MELO3C026502.2 [nucleoplasm] (Cucumis melo)
B456_013G203900 [nucleoplasm] (Gossypium raimondii)
GLYMA_03G227300 [nucleoplasm] (Glycine max)
MiLcomp141785_c0_seq2 [nucleoplasm] (Oryza minuta)
HORVU.MOREX.r3.4HG0338060 [nucleoplasm] (Hordeum vulgare)
BGIOSGA009906 [nucleoplasm] (Oryza sativa Indica Group)
GrLcomp106337_c1_seq1 [nucleoplasm] (Oryza meyeriana var. granulata)
C5167_015035 [nucleoplasm] (Papaver somniferum)
Csa14g010970 [nucleoplasm] (Camelina sativa)
KYUSg_chr4.46889 [nucleoplasm] (Lolium perenne)
OMERI03G28860 [nucleoplasm] (Oryza meridionalis)
Pp3c12_9240 [nucleoplasm] (Physcomitrella patens)
AeUmb.TA1851.r1.6UG0011660 [nucleoplasm] (Aegilops umbellulata)
A06p007290.1_BraROA [nucleoplasm] (Brassica rapa)
BRADI_1g10520v3 [nucleoplasm] (Brachypodium distachyon)
MiLcomp141825_c0_seq1 [nucleoplasm] (Oryza minuta)
PDK_30s1173761g001 [nucleoplasm] (Phoenix dactylifera)
CEY00_Acc18797 [nucleoplasm] (Actinidia chinensis)
Pp3c16_20280 [nucleoplasm] (Physcomitrella patens)
TraesTSP4D01G054700 [nucleoplasm] (Triticum spelta subsp. spelta)
Pp3c3_23790 [nucleoplasm] (Physcomitrella patens)
GrLcomp106337_c1_seq2 [nucleoplasm] (Oryza meyeriana var. granulata)
TRIDC4BG008150 [nucleoplasm] (Triticum dicoccoides)
DRNTG_06540 [nucleoplasm] (Dioscorea rotundata)
OE9A074596 [nucleoplasm] (Olea europaea)
OE9A074596 [nucleoplasm] (Olea europaea var. sylvestris)
Sspon.01G0027350-2C [nucleoplasm] (Saccharum spontaneum)
SIN_1025955 [nucleoplasm] (Sesamum indicum)
Aco013637.1.path1 [nucleoplasm] (Ananas comosus)
fgenesh2_kg.1__1007__AT1G09570.1 [nucleoplasm] (Arabidopsis lyrata)
CICLE_v10027712mg [nucleoplasm] (Citrus clementina)
MiLcomp141785_c0_seq1 [nucleoplasm] (Oryza minuta)
Csa03g012930 [nucleoplasm] (Camelina sativa)
TRITD4Bv1G015920 [nucleoplasm] (Triticum turgidum)
HanXRQr2_Chr06g0268231 [nucleoplasm] (Helianthus annuus)
Zm00001d033799 [nucleoplasm] (Zea mays)
gene-LSAT_9X83701 [nucleoplasm] (Lactuca sativa)
CEY00_Acc10700 [nucleoplasm] (Actinidia chinensis)
TanjilG_15476 [nucleoplasm] (Lupinus angustifolius)
EUGRSUZ_B01356 [nucleoplasm] (Eucalyptus grandis)
gene-CFP56_34046 [nucleoplasm] (Quercus suber)
gene4902 [nucleoplasm] (Medicago truncatula)
GLYMA_19G224200 [nucleoplasm] (Glycine max)
MELO3C026506.2 [nucleoplasm] (Cucumis melo)
arahy.Tifrunner.gnm2.ann2.Ah09g143300 [nucleoplasm] (Arachis hypogaea)
DCAR_001880 [nucleoplasm] (Daucus carota)
scaffold20.795 [nucleoplasm] (Echinochloa crus-galli)
AVESA.00001b.r3.4Ag0001335 [nucleoplasm] (Avena sativa)
A09p079430.1_BraROA [nucleoplasm] (Brassica rapa)
Et_4B_039596 [nucleoplasm] (Eragrostis tef)
scaffold35.377 [nucleoplasm] (Echinochloa crus-galli)
OfLcomp8178_c0_seq1 [nucleoplasm] (Oryza officinalis)
Pp3c4_15350 [nucleoplasm] (Physcomitrella patens)
Dexi9A01G0010910 [nucleoplasm] (Digitaria exilis)
KN538930.1_FG013 [nucleoplasm] (Oryza longistaminata)
OPUNC03G29330 [nucleoplasm] (Oryza punctata)
PITA_000048678-RA [nucleoplasm] (Pinus taeda)
Dexi2A01G0011030 [nucleoplasm] (Digitaria exilis)
gene-BT93_B1249 [nucleoplasm] (Corymbia citriodora)
AT1G09570 [nucleoplasm] (Arabidopsis thaliana)
Bo5g009990 [nucleoplasm] (Brassica oleracea)
Vitvi15g04666 [nucleoplasm] (Vitis vinifera)
GSBRNA2T00097732001 [nucleoplasm] (Brassica napus)
Potri.013G000300.v4.1 [nucleoplasm] (Populus trichocarpa)
Homologues of PfrB [nucleoplasm] (Physcomitrella patens)
Homologues of PfrB [nucleoplasm] (Selaginella moellendorffii)
T459_25337 [nucleoplasm] (Capsicum annuum)
TanjilG_17016 [nucleoplasm] (Lupinus angustifolius)
NC10G0166490 [nucleoplasm] (Nymphaea colorata)
TraesCS4A02G262900 [nucleoplasm] (Triticum aestivum)
Vradi03g07170 [nucleoplasm] (Vigna radiata)
arahy.Tifrunner.gnm2.ann2.Ah16g108300 [nucleoplasm] (Arachis hypogaea)
Dexi9B01G0010440 [nucleoplasm] (Digitaria exilis)
GSBRNA2T00019301001 [nucleoplasm] (Brassica napus)
Sspon.01G0027320-2C [nucleoplasm] (Saccharum spontaneum)
AVESA.00001b.r3.7Cg0000956 [nucleoplasm] (Avena sativa)
GQ55_9G107800 [nucleoplasm] (Panicum hallii ("FIL2"))
GQ55_9G107800 [nucleoplasm] (Panicum hallii var. hallii ("HAL2"))
GSBRNA2T00122298001 [nucleoplasm] (Brassica napus)
Jr08_15460 [nucleoplasm] (Juglans regia)
TraesCS4D02G052200 [nucleoplasm] (Triticum aestivum)
ORUFI03G33560 [nucleoplasm] (Oryza rufipogon)
GrLcomp82376_c0_seq1 [nucleoplasm] (Oryza meyeriana var. granulata)
PHAVU_007G206800g [nucleoplasm] (Phaseolus vulgaris)
Ccrd_010451 [nucleoplasm] (Cynara cardunculus var. scolymus)
EJB05_04828 [nucleoplasm] (Eragrostis curvula)
TRITD4Av1G190600 [nucleoplasm] (Triticum turgidum)
Homologues of PfrA [nucleoplasm] (Actinidia chinensis)
Homologues of PfrA [nucleoplasm] (Arachis hypogaea)
Homologues of PfrA [nucleoplasm] (Avena sativa)
Homologues of PfrA [nucleoplasm] (Brachypodium distachyon)
Homologues of PfrA [nucleoplasm] (Brassica napus)
Homologues of PfrA [nucleoplasm] (Brassica oleracea)
Homologues of PfrA [nucleoplasm] (Brassica rapa)
Homologues of PfrA [nucleoplasm] (Cajanus cajan)
Homologues of PfrA [nucleoplasm] (Camelina sativa)
Homologues of PfrA [nucleoplasm] (Cucumis melo)
Homologues of PfrA [nucleoplasm] (Cucumis sativus)
Homologues of PfrA [nucleoplasm] (Daucus carota)
Homologues of PfrA [nucleoplasm] (Digitaria exilis)
Homologues of PfrA [nucleoplasm] (Echinochloa crus-galli)
Homologues of PfrA [nucleoplasm] (Eragrostis tef)
Homologues of PfrA [nucleoplasm] (Fraxinus excelsior (European ash))
Homologues of PfrA [nucleoplasm] (Glycine max)
Homologues of PfrA [nucleoplasm] (Glycine soja)
Homologues of PfrA [nucleoplasm] (Gossypium raimondii)
Homologues of PfrA [nucleoplasm] (Helianthus annuus)
Homologues of PfrA [nucleoplasm] (Lolium perenne)
Homologues of PfrA [nucleoplasm] (Lupinus angustifolius)
Homologues of PfrA [nucleoplasm] (Malus domestica)
Homologues of PfrA [nucleoplasm] (Olea europaea)
Homologues of PfrA [nucleoplasm] (Olea europaea var. sylvestris)
Homologues of PfrA [nucleoplasm] (Oryza meyeriana var. granulata)
Homologues of PfrA [nucleoplasm] (Oryza minuta)
Homologues of PfrA [nucleoplasm] (Phaseolus vulgaris)
Homologues of PfrA [nucleoplasm] (Phoenix dactylifera)
Homologues of PfrA [nucleoplasm] (Saccharum spontaneum)
Homologues of PfrA [nucleoplasm] (Sesamum indicum)
Homologues of PfrA [nucleoplasm] (Triticum aestivum)
Homologues of PfrA [nucleoplasm] (Triticum dicoccoides)
Homologues of PfrA [nucleoplasm] (Triticum spelta subsp. spelta)
Homologues of PfrA [nucleoplasm] (Triticum timopheevii subsp. timopheevii)
Homologues of PfrA [nucleoplasm] (Triticum turgidum)
Homologues of PfrA [nucleoplasm] (Vigna angularis)
Homologues of PfrA [nucleoplasm] (Vigna radiata)
Homologues of PfrA [nucleoplasm] (Vigna unguiculata)
Homologues of PfrA [nucleoplasm] (Zea mays)
Homologues of PfrA [nucleoplasm] (Zea mays ver5)
FRAEX38873_v2_000128170 [nucleoplasm] (Fraxinus excelsior (European ash))
SELMODRAFT_161430 [nucleoplasm] (Selaginella moellendorffii)
AET4Gv20107700 [nucleoplasm] (Aegilops tauschii)
Ma08_g05980 [nucleoplasm] (Musa acuminata)
Pp3c27_7830 [nucleoplasm] (Physcomitrella patens)
Csa_6G403050 [nucleoplasm] (Cucumis sativus)
arahy.Tifrunner.gnm2.ann2.Ah19g192800 [nucleoplasm] (Arachis hypogaea)
Manes.09G182500.v8.1 [nucleoplasm] (Manihot esculenta)
AuLcomp80681_c0_seq1 [nucleoplasm] (Oryza australiensis)
SETIT_033984mg [nucleoplasm] (Setaria italica)
B456_007G292800 [nucleoplasm] (Gossypium raimondii)
GrLcomp82376_c0_seq2 [nucleoplasm] (Oryza meyeriana var. granulata)
Vigun01g205500.v1.2 [nucleoplasm] (Vigna unguiculata)
GLYMA_10G141400 [nucleoplasm] (Glycine max)
LR48_Vigan02g155300 [nucleoplasm] (Vigna angularis)
Pp3c16_18760 [nucleoplasm] (Physcomitrella patens)
QL03p011389 [nucleoplasm] (Quercus lobata)
Zm00001eb216020 [nucleoplasm] (Zea mays ver5)
ORGLA03G0410100 [nucleoplasm] (Oryza glaberrima)
AVESA.00001b.r3.4Dg0001680 [nucleoplasm] (Avena sativa)
CCACVL1_09740 [nucleoplasm] (Corchorus capsularis)
FCD_00015010 [nucleoplasm] (Ficus carica)
LOC114400064 [nucleoplasm] (Glycine soja)
arahy.Tifrunner.gnm2.ann2.Ah06g059600 [nucleoplasm] (Arachis hypogaea)
PDK_30s751971g004 [nucleoplasm] (Phoenix dactylifera)
Aradu.G6IAK [nucleoplasm] (Arachis duranensis)
DCAR_029306 [nucleoplasm] (Daucus carota)
itb15g15470 [nucleoplasm] (Ipomoea triloba)
TraesTSP4B01G054300 [nucleoplasm] (Triticum spelta subsp. spelta)
Pp3c16_26050 [nucleoplasm] (Physcomitrella patens)
FRAEX38873_v2_000117990 [nucleoplasm] (Fraxinus excelsior (European ash))
SEVIR_9G112300v2 [nucleoplasm] (Setaria viridis)
Et_4A_035456 [nucleoplasm] (Eragrostis tef)
SELMODRAFT_161807 [nucleoplasm] (Selaginella moellendorffii)
TraesTSP4A01G274000 [nucleoplasm] (Triticum spelta subsp. spelta)
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Gramene - Plant Reactome