Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
PsiMod stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
ReplacedResidue stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ModifiedResidue stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ReactionCoordinates stableIdentifier 1
EntitySet stableIdentifier 1
Complex stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Event stableIdentifier 1
Figure stableIdentifier 1
FragmentModification stableIdentifier 1
ReactionVertex stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
Edge stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Polymer stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
FunctionalStatusType stableIdentifier 1
Depolymerisation stableIdentifier 1
ReferenceSequence stableIdentifier 1
Regulation stableIdentifier 1
Requirement stableIdentifier 1
ReferenceEntity stableIdentifier 1
NegativeRegulation stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceMolecule stableIdentifier 1
EvidenceType stableIdentifier 1
EntityVertex stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Affiliation stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
PathwayDiagram stableIdentifier 1
Species stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
DatabaseObject stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
DefinedSet stableIdentifier 1
PathwayVertex stableIdentifier 1
PhysicalEntity stableIdentifier 1
CellType stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
PositiveRegulation stableIdentifier 1
Book stableIdentifier 1
GO_CellularComponent stableIdentifier 1
ControlledVocabulary stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Disease stableIdentifier 1
Vertex stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
OpenSet stableIdentifier 1
Pathway stableIdentifier 1
_Release stableIdentifier 1
URL stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Taxon stableIdentifier 1
StableIdentifier stableIdentifier 1
InstanceEdit stableIdentifier 1
_Deleted stableIdentifier 1
FailedReaction stableIdentifier 1
Publication stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FrontPage stableIdentifier 1
EntityCompartment stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
ReferenceGroup stableIdentifier 1
Polymerisation stableIdentifier 1
ReferenceDatabase stableIdentifier 1
Summation stableIdentifier 1
CatalystActivity stableIdentifier 1
CandidateSet stableIdentifier 1
TranslationalModification stableIdentifier 1
SimpleEntity stableIdentifier 1
SequenceOntology stableIdentifier 1
LiteratureReference stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Reaction stableIdentifier 1
BlackBoxEvent stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Person stableIdentifier 1
Compartment stableIdentifier 1
FunctionalStatus stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
OtherEntity stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ExternalOntology stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.