Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
CellType stableIdentifier 1
Pathway stableIdentifier 1
Event stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
PositiveRegulation stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
EntitySet stableIdentifier 1
SequenceOntology stableIdentifier 1
GO_CellularComponent stableIdentifier 1
PathwayVertex stableIdentifier 1
OtherEntity stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Vertex stableIdentifier 1
_Deleted stableIdentifier 1
Compartment stableIdentifier 1
ReferenceGroup stableIdentifier 1
FrontPage stableIdentifier 1
FunctionalStatusType stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Person stableIdentifier 1
Reaction stableIdentifier 1
EvidenceType stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Taxon stableIdentifier 1
Edge stableIdentifier 1
ReferenceDatabase stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
NegativeRegulation stableIdentifier 1
ReferenceMolecule stableIdentifier 1
FailedReaction stableIdentifier 1
Affiliation stableIdentifier 1
CatalystActivity stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
_Release stableIdentifier 1
LiteratureReference stableIdentifier 1
StableIdentifier stableIdentifier 1
PsiMod stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Polymerisation stableIdentifier 1
ModifiedResidue stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
EntityCompartment stableIdentifier 1
ReferenceEntity stableIdentifier 1
Requirement stableIdentifier 1
Depolymerisation stableIdentifier 1
ReferenceSequence stableIdentifier 1
PathwayDiagram stableIdentifier 1
Species stableIdentifier 1
Publication stableIdentifier 1
PathwayCoordinates stableIdentifier 1
SimpleEntity stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FunctionalStatus stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
Figure stableIdentifier 1
ReplacedResidue stableIdentifier 1
Summation stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
URL stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Book stableIdentifier 1
ReactionVertex stableIdentifier 1
ReferenceIsoform stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
EntityVertex stableIdentifier 1
CandidateSet stableIdentifier 1
BlackBoxEvent stableIdentifier 1
DefinedSet stableIdentifier 1
Disease stableIdentifier 1
PhysicalEntity stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Regulation stableIdentifier 1
ExternalOntology stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
OpenSet stableIdentifier 1
DatabaseObject stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Polymer stableIdentifier 1
InstanceEdit stableIdentifier 1
FragmentModification stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
Complex stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.