Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
DatabaseObject stableIdentifier 1
SimpleEntity stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
ExternalOntology stableIdentifier 1
OtherEntity stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
Reaction stableIdentifier 1
ControlledVocabulary stableIdentifier 1
FunctionalStatus stableIdentifier 1
CatalystActivity stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
FragmentModification stableIdentifier 1
DefinedSet stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
EntitySet stableIdentifier 1
PsiMod stableIdentifier 1
ReferenceSequence stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Event stableIdentifier 1
Figure stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
CandidateSet stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ProteinDrug stableIdentifier 1
NegativeRegulation stableIdentifier 1
Summation stableIdentifier 1
URL stableIdentifier 1
EntityVertex stableIdentifier 1
Affiliation stableIdentifier 1
BlackBoxEvent stableIdentifier 1
ReferenceMolecule stableIdentifier 1
ReplacedResidue stableIdentifier 1
ReactionVertex stableIdentifier 1
Pathway stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Requirement stableIdentifier 1
Person stableIdentifier 1
CellType stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
GO_CellularComponent stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Depolymerisation stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReferenceEntity stableIdentifier 1
Complex stableIdentifier 1
Taxon stableIdentifier 1
Species stableIdentifier 1
Regulation stableIdentifier 1
Compartment stableIdentifier 1
ReferenceIsoform stableIdentifier 1
_Deleted stableIdentifier 1
RNADrug stableIdentifier 1
Polymer stableIdentifier 1
PathwayVertex stableIdentifier 1
PhysicalEntity stableIdentifier 1
StableIdentifier stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
EvidenceType stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FailedReaction stableIdentifier 1
Polymerisation stableIdentifier 1
Edge stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
TranslationalModification stableIdentifier 1
ReferenceGroup stableIdentifier 1
Vertex stableIdentifier 1
EntityCompartment stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Disease stableIdentifier 1
Publication stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
PositiveRegulation stableIdentifier 1
Drug stableIdentifier 1
InstanceEdit stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
SequenceOntology stableIdentifier 1
PathwayDiagram stableIdentifier 1
OpenSet stableIdentifier 1
ChemicalDrug stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ModifiedResidue stableIdentifier 1
_Release stableIdentifier 1
LiteratureReference stableIdentifier 1
FrontPage stableIdentifier 1
Book stableIdentifier 1
ReferenceDNASequence stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.