Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
VertexSearchableTerm stableIdentifier 1
ReactionCoordinates stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
FunctionalStatus stableIdentifier 1
DatabaseObject stableIdentifier 1
FailedReaction stableIdentifier 1
PositiveRegulation stableIdentifier 1
SimpleEntity stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
PathwayDiagram stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Summation stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Polymer stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
NegativeRegulation stableIdentifier 1
URL stableIdentifier 1
Complex stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
ProteinDrug stableIdentifier 1
EvidenceType stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
GO_CellularComponent stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceEntity stableIdentifier 1
Edge stableIdentifier 1
ReferenceMolecule stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
EntityCompartment stableIdentifier 1
Person stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
InstanceEdit stableIdentifier 1
RNADrug stableIdentifier 1
OtherEntity stableIdentifier 1
PsiMod stableIdentifier 1
Publication stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Event stableIdentifier 1
PathwayVertex stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ReplacedResidue stableIdentifier 1
OpenSet stableIdentifier 1
Compartment stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
Book stableIdentifier 1
Requirement stableIdentifier 1
TranslationalModification stableIdentifier 1
FragmentModification stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
CandidateSet stableIdentifier 1
Disease stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
ReferenceGroup stableIdentifier 1
ExternalOntology stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
FrontPage stableIdentifier 1
Polymerisation stableIdentifier 1
_Deleted stableIdentifier 1
Depolymerisation stableIdentifier 1
Reaction stableIdentifier 1
ModifiedResidue stableIdentifier 1
Taxon stableIdentifier 1
CellType stableIdentifier 1
Affiliation stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ControlledVocabulary stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
Vertex stableIdentifier 1
StableIdentifier stableIdentifier 1
PhysicalEntity stableIdentifier 1
SequenceOntology stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Regulation stableIdentifier 1
ChemicalDrug stableIdentifier 1
EntityVertex stableIdentifier 1
ReferenceSequence stableIdentifier 1
Species stableIdentifier 1
Pathway stableIdentifier 1
DefinedSet stableIdentifier 1
LiteratureReference stableIdentifier 1
EntitySet stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
Figure stableIdentifier 1
CatalystActivity stableIdentifier 1
ReactionVertex stableIdentifier 1
_Release stableIdentifier 1
BlackBoxEvent stableIdentifier 1
Drug stableIdentifier 1
PathwayCoordinates stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.