Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
IntraChainCrosslinkedResidue stableIdentifier 1
ReferenceEntity stableIdentifier 1
Polymerisation stableIdentifier 1
Edge stableIdentifier 1
BlackBoxEvent stableIdentifier 1
ReferenceIsoform stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
Pathway stableIdentifier 1
PathwayDiagram stableIdentifier 1
InstanceEdit stableIdentifier 1
Vertex stableIdentifier 1
EntityCompartment stableIdentifier 1
URL stableIdentifier 1
ReactionCoordinates stableIdentifier 1
FunctionalStatusType stableIdentifier 1
StableIdentifier stableIdentifier 1
DefinedSet stableIdentifier 1
ReplacedResidue stableIdentifier 1
PositiveRegulation stableIdentifier 1
NegativeRegulation stableIdentifier 1
Species stableIdentifier 1
Complex stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
SimpleEntity stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
FailedReaction stableIdentifier 1
FrontPage stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
TranslationalModification stableIdentifier 1
Polymer stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
Compartment stableIdentifier 1
Depolymerisation stableIdentifier 1
_Deleted stableIdentifier 1
FunctionalStatus stableIdentifier 1
EntityVertex stableIdentifier 1
Publication stableIdentifier 1
LiteratureReference stableIdentifier 1
Figure stableIdentifier 1
PhysicalEntity stableIdentifier 1
ReferenceDatabase stableIdentifier 1
CellType stableIdentifier 1
Taxon stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
Person stableIdentifier 1
Requirement stableIdentifier 1
OtherEntity stableIdentifier 1
ControlledVocabulary stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Event stableIdentifier 1
PathwayCoordinates stableIdentifier 1
ReferenceMolecule stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
PathwayVertex stableIdentifier 1
ModifiedResidue stableIdentifier 1
Regulation stableIdentifier 1
DatabaseObject stableIdentifier 1
Book stableIdentifier 1
OpenSet stableIdentifier 1
CandidateSet stableIdentifier 1
Affiliation stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
SequenceOntology stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
ReferenceSequence stableIdentifier 1
CatalystActivity stableIdentifier 1
EntitySet stableIdentifier 1
GO_CellularComponent stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
PsiMod stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
Summation stableIdentifier 1
Reaction stableIdentifier 1
FragmentModification stableIdentifier 1
_Release stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
ExternalOntology stableIdentifier 1
Disease stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
ReferenceGroup stableIdentifier 1
ReactionVertex stableIdentifier 1
EvidenceType stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.