Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
InstanceEdit stableIdentifier 1
NegativeRegulation stableIdentifier 1
Edge stableIdentifier 1
Taxon stableIdentifier 1
_Deleted stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
FrontPage stableIdentifier 1
FunctionalStatus stableIdentifier 1
ReferenceIsoform stableIdentifier 1
CatalystActivity stableIdentifier 1
Summation stableIdentifier 1
Publication stableIdentifier 1
PositiveRegulation stableIdentifier 1
DatabaseObject stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Polymerisation stableIdentifier 1
OtherEntity stableIdentifier 1
EntitySet stableIdentifier 1
ReferenceDatabase stableIdentifier 1
TranslationalModification stableIdentifier 1
ReactionVertex stableIdentifier 1
GO_CellularComponent stableIdentifier 1
EntityVertex stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
SequenceOntology stableIdentifier 1
Compartment stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
DefinedSet stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
EvidenceType stableIdentifier 1
URL stableIdentifier 1
ReactionCoordinates stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
SimpleEntity stableIdentifier 1
CellType stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
Vertex stableIdentifier 1
Requirement stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
Polymer stableIdentifier 1
Figure stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
PathwayVertex stableIdentifier 1
ModifiedResidue stableIdentifier 1
Book stableIdentifier 1
ReplacedResidue stableIdentifier 1
FragmentModification stableIdentifier 1
_Release stableIdentifier 1
FailedReaction stableIdentifier 1
PathwayDiagram stableIdentifier 1
EntityCompartment stableIdentifier 1
Regulation stableIdentifier 1
Pathway stableIdentifier 1
BlackBoxEvent stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
PhysicalEntity stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceGroup stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
Event stableIdentifier 1
OpenSet stableIdentifier 1
CandidateSet stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
Species stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ExternalOntology stableIdentifier 1
PsiMod stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
Disease stableIdentifier 1
Complex stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
Person stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReferenceSequence stableIdentifier 1
StableIdentifier stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Depolymerisation stableIdentifier 1
ReferenceMolecule stableIdentifier 1
FunctionalStatusType stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
Reaction stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
Affiliation stableIdentifier 1
LiteratureReference stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.