Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Regulation stableIdentifier 1
Polymerisation stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Edge stableIdentifier 1
CatalystActivity stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
DefinedSet stableIdentifier 1
SimpleEntity stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Vertex stableIdentifier 1
InstanceEdit stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
EntityCompartment stableIdentifier 1
ReferenceMolecule stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ReferenceEntity stableIdentifier 1
Complex stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
Affiliation stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
EntityVertex stableIdentifier 1
ReferenceGroup stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
FrontPage stableIdentifier 1
RNADrug stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
BlackBoxEvent stableIdentifier 1
SequenceOntology stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
CandidateSet stableIdentifier 1
ReferenceIsoform stableIdentifier 1
ProteinDrug stableIdentifier 1
ModifiedResidue stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
_Release stableIdentifier 1
StableIdentifier stableIdentifier 1
ReferenceSequence stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
Summation stableIdentifier 1
Species stableIdentifier 1
Publication stableIdentifier 1
Disease stableIdentifier 1
Figure stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
PathwayVertex stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
FailedReaction stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
ExternalOntology stableIdentifier 1
FunctionalStatus stableIdentifier 1
TranslationalModification stableIdentifier 1
Reaction stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
ControlledVocabulary stableIdentifier 1
Taxon stableIdentifier 1
DatabaseObject stableIdentifier 1
ReplacedResidue stableIdentifier 1
EntitySet stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
Polymer stableIdentifier 1
Compartment stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
Pathway stableIdentifier 1
PathwayDiagram stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
OtherEntity stableIdentifier 1
OpenSet stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
_Deleted stableIdentifier 1
EvidenceType stableIdentifier 1
PhysicalEntity stableIdentifier 1
ReactionVertex stableIdentifier 1
URL stableIdentifier 1
ReferenceDatabase stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
NegativeRegulation stableIdentifier 1
Requirement stableIdentifier 1
Book stableIdentifier 1
PsiMod stableIdentifier 1
FunctionalStatusType stableIdentifier 1
ChemicalDrug stableIdentifier 1
GO_CellularComponent stableIdentifier 1
LiteratureReference stableIdentifier 1
CellType stableIdentifier 1
Drug stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
Person stableIdentifier 1
Event stableIdentifier 1
PositiveRegulation stableIdentifier 1
Depolymerisation stableIdentifier 1
FragmentModification stableIdentifier 1
ReactionCoordinates stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.