Reactome: A Curated Pathway Database

Attributes of class 'StableIdentifier'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
identifier 1 TEXT N/A StableIdentifier   TEXT
identifierVersion 1 TEXT N/A StableIdentifier   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
oldIdentifier 1 TEXT N/A StableIdentifier   TEXT
oldIdentifierVersion 1 TEXT N/A StableIdentifier   TEXT
released 1 OTHER N/A StableIdentifier   ENUM('TRUE','FALSE')
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'StableIdentifier' instances

Class name Attribute name Cardinality
Event stableIdentifier 1
AbstractModifiedResidue stableIdentifier 1
CandidateSet stableIdentifier 1
ChemicalDrug stableIdentifier 1
Book stableIdentifier 1
FragmentReplacedModification stableIdentifier 1
ModifiedResidue stableIdentifier 1
PathwayCoordinates stableIdentifier 1
Polymer stableIdentifier 1
VertexSearchableTerm stableIdentifier 1
FrontPage stableIdentifier 1
PositiveRegulation stableIdentifier 1
_Release stableIdentifier 1
DeletedControlledVocabulary stableIdentifier 1
GenomeEncodedEntity stableIdentifier 1
Figure stableIdentifier 1
FailedReaction stableIdentifier 1
SequenceOntology stableIdentifier 1
OtherEntity stableIdentifier 1
ReferenceDNASequence stableIdentifier 1
EntityVertex stableIdentifier 1
URL stableIdentifier 1
PositiveGeneExpressionRegulation stableIdentifier 1
ExternalOntology stableIdentifier 1
ReferenceEntity stableIdentifier 1
ReferenceRNASequence stableIdentifier 1
ReferenceTherapeutic stableIdentifier 1
Requirement stableIdentifier 1
Disease stableIdentifier 1
ReferenceSequence stableIdentifier 1
_Deleted stableIdentifier 1
Polymerisation stableIdentifier 1
Person stableIdentifier 1
ReferenceMolecule stableIdentifier 1
EvidenceType stableIdentifier 1
EntityCompartment stableIdentifier 1
OpenSet stableIdentifier 1
CrosslinkedResidue stableIdentifier 1
GroupModifiedResidue stableIdentifier 1
ReferenceIsoform stableIdentifier 1
CellType stableIdentifier 1
StableIdentifier stableIdentifier 1
PathwayDiagramItem stableIdentifier 1
InterChainCrosslinkedResidue stableIdentifier 1
ConcurrentEventSet stableIdentifier 1
ControlledVocabulary stableIdentifier 1
FunctionalStatusType stableIdentifier 1
Publication stableIdentifier 1
ReactionCoordinates stableIdentifier 1
Depolymerisation stableIdentifier 1
PsiMod stableIdentifier 1
GO_MolecularFunction stableIdentifier 1
NegativeRegulation stableIdentifier 1
FragmentInsertionModification stableIdentifier 1
FragmentDeletionModification stableIdentifier 1
EntityWithAccessionedSequence stableIdentifier 1
Summation stableIdentifier 1
FragmentModification stableIdentifier 1
SimpleEntity stableIdentifier 1
FunctionalStatus stableIdentifier 1
EntitySet stableIdentifier 1
EntityFunctionalStatus stableIdentifier 1
PhysicalEntity stableIdentifier 1
Species stableIdentifier 1
Regulation stableIdentifier 1
Complex stableIdentifier 1
ReactionlikeEvent stableIdentifier 1
_InstanceBeforeChange stableIdentifier 1
BlackBoxEvent stableIdentifier 1
ProteinDrug stableIdentifier 1
GeneticallyModifiedResidue stableIdentifier 1
PathwayDiagram stableIdentifier 1
Taxon stableIdentifier 1
ReactionVertex stableIdentifier 1
LiteratureReference stableIdentifier 1
Affiliation stableIdentifier 1
Pathway stableIdentifier 1
CatalystActivity stableIdentifier 1
IntraChainCrosslinkedResidue stableIdentifier 1
NegativeGeneExpressionRegulation stableIdentifier 1
Reaction stableIdentifier 1
DefinedSet stableIdentifier 1
InstanceEdit stableIdentifier 1
ReferenceGroup stableIdentifier 1
ReferenceDatabase stableIdentifier 1
_AttributeValueBeforeChange stableIdentifier 1
Compartment stableIdentifier 1
GO_BiologicalProcess stableIdentifier 1
RNADrug stableIdentifier 1
Vertex stableIdentifier 1
GO_CellularComponent stableIdentifier 1
DatabaseObject stableIdentifier 1
Edge stableIdentifier 1
DatabaseIdentifier stableIdentifier 1
ReferenceGeneProduct stableIdentifier 1
Drug stableIdentifier 1
PathwayVertex stableIdentifier 1
TranslationalModification stableIdentifier 1
ReplacedResidue stableIdentifier 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.