Reactome: A Curated Pathway Database

Attributes of class 'ReferenceGeneProduct'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_chainChangeLog 1 TEXT N/A ReferenceGeneProduct   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
chain + TEXT N/A ReferenceGeneProduct   TEXT
checksum 1 TEXT N/A ReferenceSequence   TEXT
comment + TEXT N/A ReferenceSequence   TEXT
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier ReferenceEntity   INTEGER(10) UNSIGNED
description + TEXT N/A ReferenceSequence   TEXT
geneName + TEXT N/A ReferenceSequence   TEXT
identifier 1 TEXT N/A ReferenceEntity ALL TEXT
isSequenceChanged 1 TEXT N/A ReferenceSequence   TEXT
keyword + TEXT N/A ReferenceSequence   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A ReferenceEntity   TEXT
otherIdentifier + TEXT N/A ReferenceEntity   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase ReferenceEntity ALL INTEGER(10) UNSIGNED
referenceGene + INSTANCE ReferenceDNASequence ReferenceGeneProduct   INTEGER(10) UNSIGNED
referenceTranscript + INSTANCE ReferenceRNASequence ReferenceGeneProduct   INTEGER(10) UNSIGNED
secondaryIdentifier + TEXT N/A ReferenceSequence   TEXT
sequenceLength 1 INTEGER N/A ReferenceSequence   INTEGER(10)
species 1 INSTANCE Species ReferenceSequence ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'ReferenceGeneProduct' instances

Class name Attribute name Cardinality
EntityWithAccessionedSequence referenceEntity 1
ProteinDrug referenceEntity 1
OpenSet referenceEntity 1
InterChainCrosslinkedResidue secondReferenceSequence +
VertexSearchableTerm termProvider +
FragmentModification referenceSequence 1
InterChainCrosslinkedResidue referenceSequence 1
GroupModifiedResidue referenceSequence 1
ModifiedResidue referenceSequence 1
FragmentReplacedModification referenceSequence 1
CrosslinkedResidue referenceSequence 1
IntraChainCrosslinkedResidue referenceSequence 1
FragmentInsertionModification referenceSequence 1
ReplacedResidue referenceSequence 1
GeneticallyModifiedResidue referenceSequence 1
TranslationalModification referenceSequence 1
AbstractModifiedResidue referenceSequence 1
FragmentDeletionModification referenceSequence 1
ReferenceIsoform isoformParent +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.