Reactome: A Curated Pathway Database

Attributes of class 'LiteratureReference'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person Publication   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
journal 1 TEXT N/A LiteratureReference   varchar(255)
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
pages 1 TEXT N/A LiteratureReference   TEXT
pubMedIdentifier 1 INTEGER N/A LiteratureReference ALL INTEGER(10)
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
title 1 TEXT N/A Publication   TEXT
volume 1 INTEGER N/A LiteratureReference   INTEGER(10)
year 1 INTEGER N/A LiteratureReference   INTEGER(10)

Referers of class 'LiteratureReference' instances

Class name Attribute name Cardinality
PositiveGeneExpressionRegulation literatureReference +
PositiveRegulation literatureReference +
CandidateSet literatureReference +
Polymerisation literatureReference +
Complex literatureReference +
Event literatureReference +
GenomeEncodedEntity literatureReference +
Polymer literatureReference +
NegativeRegulation literatureReference +
EntityWithAccessionedSequence literatureReference +
ChemicalDrug literatureReference +
ReactionlikeEvent literatureReference +
Pathway literatureReference +
Reaction literatureReference +
SimpleEntity literatureReference +
Depolymerisation literatureReference +
CatalystActivity literatureReference +
EntitySet literatureReference +
OpenSet literatureReference +
FailedReaction literatureReference +
DefinedSet literatureReference +
Drug literatureReference +
Regulation literatureReference +
OtherEntity literatureReference +
NegativeGeneExpressionRegulation literatureReference +
PhysicalEntity literatureReference +
Summation literatureReference +
BlackBoxEvent literatureReference +
Requirement literatureReference +
ProteinDrug literatureReference +
RNADrug literatureReference +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.