Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
PositiveRegulation reviewed +
OtherEntity reviewed +
PositiveGeneExpressionRegulation reviewed +
Polymer reviewed +
Polymerisation reviewed +
Drug reviewed +
RNADrug reviewed +
Reaction reviewed +
GenomeEncodedEntity reviewed +
DefinedSet reviewed +
ChemicalDrug reviewed +
NegativeGeneExpressionRegulation reviewed +
Pathway reviewed +
CandidateSet reviewed +
Depolymerisation reviewed +
FailedReaction reviewed +
PhysicalEntity reviewed +
NegativeRegulation reviewed +
SimpleEntity reviewed +
Regulation reviewed +
Event reviewed +
ReactionlikeEvent reviewed +
Requirement reviewed +
EntitySet reviewed +
OpenSet reviewed +
BlackBoxEvent reviewed +
ProteinDrug reviewed +
EntityWithAccessionedSequence reviewed +
Complex reviewed +
ChemicalDrug edited +
DefinedSet edited +
GenomeEncodedEntity edited +
Reaction edited +
CandidateSet edited +
NegativeGeneExpressionRegulation edited +
Pathway edited +
Depolymerisation edited +
NegativeRegulation edited +
PhysicalEntity edited +
FailedReaction edited +
OtherEntity edited +
PositiveGeneExpressionRegulation edited +
PositiveRegulation edited +
Drug edited +
RNADrug edited +
Polymerisation edited +
Polymer edited +
OpenSet edited +
Requirement edited +
EntitySet edited +
BlackBoxEvent edited +
ProteinDrug edited +
Complex edited +
EntityWithAccessionedSequence edited +
SimpleEntity edited +
ReactionlikeEvent edited +
Event edited +
Regulation edited +
Depolymerisation authored +
NegativeRegulation authored 1
PhysicalEntity authored 1
FailedReaction authored +
DefinedSet authored 1
ChemicalDrug authored 1
Reaction authored +
GenomeEncodedEntity authored 1
CandidateSet authored 1
Pathway authored +
NegativeGeneExpressionRegulation authored 1
PositiveGeneExpressionRegulation authored 1
OtherEntity authored 1
PositiveRegulation authored 1
Polymerisation authored +
Drug authored 1
RNADrug authored 1
Polymer authored 1
BlackBoxEvent authored +
ProteinDrug authored 1
EntityWithAccessionedSequence authored 1
Complex authored 1
OpenSet authored 1
EntitySet authored 1
Requirement authored 1
Event authored +
ReactionlikeEvent authored +
Regulation authored 1
SimpleEntity authored 1
_InstanceBeforeChange instanceEdit 1
PositiveRegulation revised +
PositiveGeneExpressionRegulation revised +
OtherEntity revised +
Polymer revised +
Polymerisation revised +
Drug revised +
RNADrug revised +
Depolymerisation revised +
PhysicalEntity revised +
FailedReaction revised +
NegativeRegulation revised +
GenomeEncodedEntity revised +
Reaction revised +
DefinedSet revised +
ChemicalDrug revised +
NegativeGeneExpressionRegulation revised +
Pathway revised +
CandidateSet revised +
Regulation revised +
Event revised +
ReactionlikeEvent revised +
SimpleEntity revised +
BlackBoxEvent revised +
ProteinDrug revised +
Complex revised +
EntityWithAccessionedSequence revised +
EntitySet revised +
Requirement revised +
OpenSet revised +
NegativeRegulation modified +
ReferenceSequence modified +
CandidateSet modified +
ChemicalDrug modified +
RNADrug modified +
EntityVertex modified +
FrontPage modified +
EntityFunctionalStatus modified +
GO_BiologicalProcess modified +
GO_MolecularFunction modified +
Disease modified +
Compartment modified +
Figure modified +
Affiliation modified +
CrosslinkedResidue modified +
ControlledVocabulary modified +
FunctionalStatusType modified +
PathwayCoordinates modified +
CellType modified +
DatabaseIdentifier modified +
ReplacedResidue modified +
PathwayDiagram modified +
FragmentDeletionModification modified +
_InstanceBeforeChange modified +
ReferenceDatabase modified +
FailedReaction modified +
PhysicalEntity modified +
_AttributeValueBeforeChange modified +
ReferenceMolecule modified +
VertexSearchableTerm modified +
Pathway modified +
Person modified +
FragmentReplacedModification modified +
DefinedSet modified +
DeletedControlledVocabulary modified +
ReferenceTherapeutic modified +
FragmentModification modified +
Complex modified +
Taxon modified +
EvidenceType modified +
Species modified +
OpenSet modified +
Vertex modified +
PathwayDiagramItem modified +
InterChainCrosslinkedResidue modified +
ReferenceEntity modified +
ReactionlikeEvent modified +
ModifiedResidue modified +
Event modified +
DatabaseObject modified +
Regulation modified +
ReferenceGroup modified +
_Release modified +
SimpleEntity modified +
ReferenceDNASequence modified +
NegativeGeneExpressionRegulation modified +
Publication modified +
AbstractModifiedResidue modified +
Reaction modified +
FunctionalStatus modified +
OtherEntity modified +
_Deleted modified +
PositiveRegulation modified +
Summation modified +
ExternalOntology modified +
ReferenceRNASequence modified +
LiteratureReference modified +
ReactionVertex modified +
ConcurrentEventSet modified +
EntityCompartment modified +
BlackBoxEvent modified +
ReactionCoordinates modified +
Requirement modified +
TranslationalModification modified +
IntraChainCrosslinkedResidue modified +
Book modified +
Depolymerisation modified +
SequenceOntology modified +
FragmentInsertionModification modified +
InstanceEdit modified +
GenomeEncodedEntity modified +
Drug modified +
Polymerisation modified +
Polymer modified +
GroupModifiedResidue modified +
PositiveGeneExpressionRegulation modified +
PsiMod modified +
CatalystActivity modified +
ReferenceGeneProduct modified +
EntityWithAccessionedSequence modified +
ProteinDrug modified +
Edge modified +
EntitySet modified +
PathwayVertex modified +
ReferenceIsoform modified +
StableIdentifier modified +
GeneticallyModifiedResidue modified +
URL modified +
GO_CellularComponent modified +
IntraChainCrosslinkedResidue created 1
Requirement created 1
TranslationalModification created 1
ConcurrentEventSet created 1
BlackBoxEvent created 1
EntityCompartment created 1
ReactionCoordinates created 1
Summation created 1
ExternalOntology created 1
ReferenceRNASequence created 1
ReactionVertex created 1
LiteratureReference created 1
_Deleted created 1
OtherEntity created 1
PositiveRegulation created 1
NegativeGeneExpressionRegulation created 1
Publication created 1
AbstractModifiedResidue created 1
Reaction created 1
FunctionalStatus created 1
ReferenceIsoform created 1
StableIdentifier created 1
GeneticallyModifiedResidue created 1
URL created 1
GO_CellularComponent created 1
Edge created 1
EntitySet created 1
PathwayVertex created 1
ReferenceGeneProduct created 1
CatalystActivity created 1
EntityWithAccessionedSequence created 1
ProteinDrug created 1
PsiMod created 1
Polymerisation created 1
Drug created 1
Polymer created 1
GroupModifiedResidue created 1
PositiveGeneExpressionRegulation created 1
InstanceEdit created 1
GenomeEncodedEntity created 1
Book created 1
SequenceOntology created 1
FragmentInsertionModification created 1
Depolymerisation created 1
FragmentDeletionModification created 1
_InstanceBeforeChange created 1
DatabaseIdentifier created 1
CellType created 1
ReplacedResidue created 1
PathwayDiagram created 1
Figure created 1
Affiliation created 1
CrosslinkedResidue created 1
ControlledVocabulary created 1
FunctionalStatusType created 1
PathwayCoordinates created 1
GO_BiologicalProcess created 1
EntityFunctionalStatus created 1
Disease created 1
GO_MolecularFunction created 1
Compartment created 1
FrontPage created 1
RNADrug created 1
EntityVertex created 1
CandidateSet created 1
ChemicalDrug created 1
NegativeRegulation created 1
ReferenceSequence created 1
SimpleEntity created 1
_Release created 1
ReferenceDNASequence created 1
ReferenceEntity created 1
ReactionlikeEvent created 1
DatabaseObject created 1
ModifiedResidue created 1
Event created 1
ReferenceGroup created 1
Regulation created 1
OpenSet created 1
Vertex created 1
InterChainCrosslinkedResidue created 1
PathwayDiagramItem created 1
Taxon created 1
Complex created 1
Species created 1
EvidenceType created 1
ReferenceTherapeutic created 1
FragmentModification created 1
VertexSearchableTerm created 1
Person created 1
Pathway created 1
DefinedSet created 1
FragmentReplacedModification created 1
DeletedControlledVocabulary created 1
ReferenceDatabase created 1
FailedReaction created 1
PhysicalEntity created 1
_AttributeValueBeforeChange created 1
ReferenceMolecule created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.