Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Reaction created 1
_InstanceBeforeChange created 1
Vertex created 1
EntityFunctionalStatus created 1
ReferenceIsoform created 1
Requirement created 1
ReactionVertex created 1
Polymerisation created 1
ReactionCoordinates created 1
ControlledVocabulary created 1
PsiMod created 1
Book created 1
DatabaseObject created 1
DefinedSet created 1
NegativeGeneExpressionRegulation created 1
Edge created 1
ChemicalDrug created 1
Person created 1
FragmentModification created 1
Summation created 1
CellType created 1
GeneticallyModifiedResidue created 1
ConcurrentEventSet created 1
GroupModifiedResidue created 1
BlackBoxEvent created 1
Polymer created 1
Affiliation created 1
Species created 1
ReferenceSequence created 1
ReferenceRNASequence created 1
EntityWithAccessionedSequence created 1
Regulation created 1
GO_BiologicalProcess created 1
PositiveRegulation created 1
Figure created 1
SimpleEntity created 1
OpenSet created 1
ReferenceDNASequence created 1
ExternalOntology created 1
EntitySet created 1
Drug created 1
CandidateSet created 1
FunctionalStatus created 1
_Release created 1
ReactionlikeEvent created 1
Complex created 1
PathwayCoordinates created 1
SequenceOntology created 1
FunctionalStatusType created 1
FragmentReplacedModification created 1
ReferenceDatabase created 1
GenomeEncodedEntity created 1
LiteratureReference created 1
ModifiedResidue created 1
GO_CellularComponent created 1
Taxon created 1
_Deleted created 1
PathwayVertex created 1
Publication created 1
Event created 1
InstanceEdit created 1
FragmentInsertionModification created 1
TranslationalModification created 1
URL created 1
RNADrug created 1
ProteinDrug created 1
PathwayDiagramItem created 1
IntraChainCrosslinkedResidue created 1
_AttributeValueBeforeChange created 1
EntityCompartment created 1
ReferenceTherapeutic created 1
Compartment created 1
AbstractModifiedResidue created 1
FragmentDeletionModification created 1
GO_MolecularFunction created 1
CatalystActivity created 1
OtherEntity created 1
StableIdentifier created 1
EntityVertex created 1
ReferenceEntity created 1
Disease created 1
ReferenceMolecule created 1
PositiveGeneExpressionRegulation created 1
PathwayDiagram created 1
DeletedControlledVocabulary created 1
ReplacedResidue created 1
Pathway created 1
FailedReaction created 1
Depolymerisation created 1
VertexSearchableTerm created 1
ReferenceGeneProduct created 1
PhysicalEntity created 1
ReferenceGroup created 1
DatabaseIdentifier created 1
NegativeRegulation created 1
InterChainCrosslinkedResidue created 1
EvidenceType created 1
CrosslinkedResidue created 1
FrontPage created 1
Polymerisation revised +
PositiveRegulation revised +
Event revised +
SimpleEntity revised +
PositiveGeneExpressionRegulation revised +
DefinedSet revised +
Reaction revised +
EntityWithAccessionedSequence revised +
Regulation revised +
Requirement revised +
OtherEntity revised +
BlackBoxEvent revised +
Polymer revised +
GenomeEncodedEntity revised +
NegativeGeneExpressionRegulation revised +
OpenSet revised +
ChemicalDrug revised +
Pathway revised +
EntitySet revised +
FailedReaction revised +
Depolymerisation revised +
Drug revised +
RNADrug revised +
CandidateSet revised +
PhysicalEntity revised +
ReactionlikeEvent revised +
ProteinDrug revised +
NegativeRegulation revised +
Complex revised +
DefinedSet authored 1
PositiveGeneExpressionRegulation authored 1
SimpleEntity authored 1
Event authored +
PositiveRegulation authored 1
Polymerisation authored +
OtherEntity authored 1
Requirement authored 1
EntityWithAccessionedSequence authored 1
Regulation authored 1
Reaction authored +
GenomeEncodedEntity authored 1
Polymer authored 1
BlackBoxEvent authored +
NegativeRegulation authored 1
Complex authored 1
ReactionlikeEvent authored +
ProteinDrug authored 1
PhysicalEntity authored 1
CandidateSet authored 1
FailedReaction authored +
RNADrug authored 1
Depolymerisation authored +
Drug authored 1
Pathway authored +
ChemicalDrug authored 1
EntitySet authored 1
NegativeGeneExpressionRegulation authored 1
OpenSet authored 1
Polymerisation edited +
PositiveRegulation edited +
Event edited +
SimpleEntity edited +
PositiveGeneExpressionRegulation edited +
DefinedSet edited +
Reaction edited +
Regulation edited +
EntityWithAccessionedSequence edited +
Requirement edited +
OtherEntity edited +
BlackBoxEvent edited +
Polymer edited +
GenomeEncodedEntity edited +
OpenSet edited +
NegativeGeneExpressionRegulation edited +
Pathway edited +
EntitySet edited +
ChemicalDrug edited +
RNADrug edited +
FailedReaction edited +
Depolymerisation edited +
Drug edited +
CandidateSet edited +
PhysicalEntity edited +
ProteinDrug edited +
ReactionlikeEvent edited +
NegativeRegulation edited +
Complex edited +
FailedReaction reviewed +
Depolymerisation reviewed +
RNADrug reviewed +
Drug reviewed +
Pathway reviewed +
EntitySet reviewed +
ChemicalDrug reviewed +
NegativeGeneExpressionRegulation reviewed +
OpenSet reviewed +
NegativeRegulation reviewed +
Complex reviewed +
ProteinDrug reviewed +
ReactionlikeEvent reviewed +
PhysicalEntity reviewed +
CandidateSet reviewed +
GenomeEncodedEntity reviewed +
Polymer reviewed +
BlackBoxEvent reviewed +
EntityWithAccessionedSequence reviewed +
Regulation reviewed +
Reaction reviewed +
OtherEntity reviewed +
Requirement reviewed +
Event reviewed +
PositiveRegulation reviewed +
Polymerisation reviewed +
DefinedSet reviewed +
SimpleEntity reviewed +
PositiveGeneExpressionRegulation reviewed +
_InstanceBeforeChange instanceEdit 1
PhysicalEntity modified +
ReferenceGeneProduct modified +
NegativeRegulation modified +
DatabaseIdentifier modified +
ReferenceGroup modified +
DeletedControlledVocabulary modified +
ReplacedResidue modified +
FailedReaction modified +
Depolymerisation modified +
VertexSearchableTerm modified +
Pathway modified +
CrosslinkedResidue modified +
InterChainCrosslinkedResidue modified +
EvidenceType modified +
FrontPage modified +
CatalystActivity modified +
GO_MolecularFunction modified +
OtherEntity modified +
AbstractModifiedResidue modified +
Compartment modified +
ReferenceTherapeutic modified +
FragmentDeletionModification modified +
PositiveGeneExpressionRegulation modified +
PathwayDiagram modified +
StableIdentifier modified +
EntityVertex modified +
ReferenceEntity modified +
Disease modified +
ReferenceMolecule modified +
PathwayDiagramItem modified +
ProteinDrug modified +
URL modified +
RNADrug modified +
EntityCompartment modified +
_AttributeValueBeforeChange modified +
IntraChainCrosslinkedResidue modified +
GO_CellularComponent modified +
LiteratureReference modified +
ModifiedResidue modified +
Taxon modified +
FragmentInsertionModification modified +
TranslationalModification modified +
_Deleted modified +
PathwayVertex modified +
Publication modified +
Event modified +
InstanceEdit modified +
_Release modified +
FunctionalStatus modified +
CandidateSet modified +
Complex modified +
PathwayCoordinates modified +
ReactionlikeEvent modified +
ExternalOntology modified +
ReferenceDNASequence modified +
OpenSet modified +
Drug modified +
EntitySet modified +
GenomeEncodedEntity modified +
ReferenceDatabase modified +
FragmentReplacedModification modified +
FunctionalStatusType modified +
SequenceOntology modified +
Species modified +
EntityWithAccessionedSequence modified +
Regulation modified +
ReferenceSequence modified +
ReferenceRNASequence modified +
SimpleEntity modified +
Figure modified +
GO_BiologicalProcess modified +
PositiveRegulation modified +
CellType modified +
Summation modified +
NegativeGeneExpressionRegulation modified +
FragmentModification modified +
ChemicalDrug modified +
Edge modified +
Person modified +
Polymer modified +
Affiliation modified +
GroupModifiedResidue modified +
BlackBoxEvent modified +
GeneticallyModifiedResidue modified +
ConcurrentEventSet modified +
Requirement modified +
ReferenceIsoform modified +
Vertex modified +
_InstanceBeforeChange modified +
Reaction modified +
EntityFunctionalStatus modified +
Book modified +
DefinedSet modified +
DatabaseObject modified +
ReactionCoordinates modified +
Polymerisation modified +
ReactionVertex modified +
ControlledVocabulary modified +
PsiMod modified +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.