Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
_InstanceBeforeChange instanceEdit 1
OpenSet revised +
Regulation revised +
PositiveGeneExpressionRegulation revised +
SimpleEntity revised +
ChemicalDrug revised +
CandidateSet revised +
BlackBoxEvent revised +
EntityWithAccessionedSequence revised +
FailedReaction revised +
NegativeRegulation revised +
Drug revised +
PhysicalEntity revised +
OtherEntity revised +
GenomeEncodedEntity revised +
DefinedSet revised +
Polymerisation revised +
Event revised +
Pathway revised +
ReactionlikeEvent revised +
Reaction revised +
EntitySet revised +
Depolymerisation revised +
Requirement revised +
RNADrug revised +
PositiveRegulation revised +
Complex revised +
Polymer revised +
ProteinDrug revised +
NegativeGeneExpressionRegulation revised +
Requirement authored 1
Depolymerisation authored +
EntitySet authored 1
ReactionlikeEvent authored +
Reaction authored +
Event authored +
Polymerisation authored +
Pathway authored +
ProteinDrug authored 1
NegativeGeneExpressionRegulation authored 1
Complex authored 1
Polymer authored 1
RNADrug authored 1
PositiveRegulation authored 1
SimpleEntity authored 1
EntityWithAccessionedSequence authored 1
BlackBoxEvent authored +
CandidateSet authored 1
ChemicalDrug authored 1
Regulation authored 1
OpenSet authored 1
PositiveGeneExpressionRegulation authored 1
GenomeEncodedEntity authored 1
DefinedSet authored 1
Drug authored 1
PhysicalEntity authored 1
OtherEntity authored 1
NegativeRegulation authored 1
FailedReaction authored +
RNADrug reviewed +
PositiveRegulation reviewed +
Complex reviewed +
Polymer reviewed +
ProteinDrug reviewed +
NegativeGeneExpressionRegulation reviewed +
Polymerisation reviewed +
Event reviewed +
Pathway reviewed +
EntitySet reviewed +
ReactionlikeEvent reviewed +
Reaction reviewed +
Depolymerisation reviewed +
Requirement reviewed +
FailedReaction reviewed +
NegativeRegulation reviewed +
Drug reviewed +
PhysicalEntity reviewed +
OtherEntity reviewed +
GenomeEncodedEntity reviewed +
DefinedSet reviewed +
Regulation reviewed +
OpenSet reviewed +
PositiveGeneExpressionRegulation reviewed +
SimpleEntity reviewed +
BlackBoxEvent reviewed +
CandidateSet reviewed +
EntityWithAccessionedSequence reviewed +
ChemicalDrug reviewed +
Affiliation modified +
OpenSet modified +
StableIdentifier modified +
EntityWithAccessionedSequence modified +
InterChainCrosslinkedResidue modified +
ControlledVocabulary modified +
DatabaseObject modified +
ReferenceEntity modified +
EntityFunctionalStatus modified +
ReactionCoordinates modified +
GenomeEncodedEntity modified +
SequenceOntology modified +
NegativeRegulation modified +
PathwayDiagram modified +
Requirement modified +
PsiMod modified +
Polymerisation modified +
Event modified +
Pathway modified +
FragmentReplacedModification modified +
EntitySet modified +
PathwayDiagramItem modified +
FragmentModification modified +
_AttributeValueBeforeChange modified +
FunctionalStatusType modified +
RNADrug modified +
SimpleEntity modified +
EvidenceType modified +
AbstractModifiedResidue modified +
Drug modified +
PhysicalEntity modified +
Summation modified +
ReferenceGeneProduct modified +
Vertex modified +
ReferenceMolecule modified +
Depolymerisation modified +
EntityCompartment modified +
CatalystActivity modified +
_Deleted modified +
ReferenceDNASequence modified +
GO_BiologicalProcess modified +
ReactionlikeEvent modified +
Compartment modified +
Publication modified +
VertexSearchableTerm modified +
ChemicalDrug modified +
ReactionVertex modified +
DeletedControlledVocabulary modified +
GO_MolecularFunction modified +
ConcurrentEventSet modified +
ReplacedResidue modified +
CellType modified +
Figure modified +
DefinedSet modified +
FailedReaction modified +
FragmentInsertionModification modified +
Book modified +
EntityVertex modified +
TranslationalModification modified +
Edge modified +
ReferenceIsoform modified +
GeneticallyModifiedResidue modified +
Reaction modified +
FragmentDeletionModification modified +
PathwayVertex modified +
ReferenceSequence modified +
ModifiedResidue modified +
GroupModifiedResidue modified +
ExternalOntology modified +
ReferenceRNASequence modified +
PositiveRegulation modified +
FunctionalStatus modified +
Polymer modified +
_Release modified +
Regulation modified +
PositiveGeneExpressionRegulation modified +
ReferenceGroup modified +
BlackBoxEvent modified +
ReferenceTherapeutic modified +
CandidateSet modified +
InstanceEdit modified +
Taxon modified +
LiteratureReference modified +
CrosslinkedResidue modified +
OtherEntity modified +
ReferenceDatabase modified +
PathwayCoordinates modified +
GO_CellularComponent modified +
URL modified +
Disease modified +
FrontPage modified +
Person modified +
ProteinDrug modified +
_InstanceBeforeChange modified +
NegativeGeneExpressionRegulation modified +
IntraChainCrosslinkedResidue modified +
Species modified +
DatabaseIdentifier modified +
Complex modified +
Polymer edited +
Complex edited +
PositiveRegulation edited +
RNADrug edited +
NegativeGeneExpressionRegulation edited +
ProteinDrug edited +
EntitySet edited +
ReactionlikeEvent edited +
Reaction edited +
Pathway edited +
Event edited +
Polymerisation edited +
Requirement edited +
Depolymerisation edited +
FailedReaction edited +
NegativeRegulation edited +
DefinedSet edited +
GenomeEncodedEntity edited +
OtherEntity edited +
PhysicalEntity edited +
Drug edited +
ChemicalDrug edited +
CandidateSet edited +
BlackBoxEvent edited +
EntityWithAccessionedSequence edited +
SimpleEntity edited +
PositiveGeneExpressionRegulation edited +
Regulation edited +
OpenSet edited +
PhysicalEntity created 1
Drug created 1
ReferenceGeneProduct created 1
Summation created 1
Vertex created 1
ReferenceMolecule created 1
EvidenceType created 1
SimpleEntity created 1
AbstractModifiedResidue created 1
VertexSearchableTerm created 1
Publication created 1
EntityCompartment created 1
Depolymerisation created 1
_Deleted created 1
CatalystActivity created 1
ReferenceDNASequence created 1
ReactionlikeEvent created 1
Compartment created 1
GO_BiologicalProcess created 1
ReactionCoordinates created 1
EntityFunctionalStatus created 1
GenomeEncodedEntity created 1
NegativeRegulation created 1
SequenceOntology created 1
StableIdentifier created 1
Affiliation created 1
OpenSet created 1
EntityWithAccessionedSequence created 1
InterChainCrosslinkedResidue created 1
ReferenceEntity created 1
DatabaseObject created 1
ControlledVocabulary created 1
PathwayDiagramItem created 1
FragmentModification created 1
_AttributeValueBeforeChange created 1
RNADrug created 1
FunctionalStatusType created 1
PathwayDiagram created 1
PsiMod created 1
Requirement created 1
Pathway created 1
Event created 1
Polymerisation created 1
EntitySet created 1
FragmentReplacedModification created 1
ReferenceDatabase created 1
OtherEntity created 1
GO_CellularComponent created 1
PathwayCoordinates created 1
URL created 1
Disease created 1
PositiveGeneExpressionRegulation created 1
Regulation created 1
BlackBoxEvent created 1
CandidateSet created 1
ReferenceTherapeutic created 1
InstanceEdit created 1
ReferenceGroup created 1
Taxon created 1
CrosslinkedResidue created 1
LiteratureReference created 1
Species created 1
IntraChainCrosslinkedResidue created 1
Person created 1
_InstanceBeforeChange created 1
ProteinDrug created 1
NegativeGeneExpressionRegulation created 1
DatabaseIdentifier created 1
Complex created 1
FrontPage created 1
DefinedSet created 1
ReplacedResidue created 1
Figure created 1
CellType created 1
FailedReaction created 1
FragmentInsertionModification created 1
Book created 1
ChemicalDrug created 1
DeletedControlledVocabulary created 1
ReactionVertex created 1
ConcurrentEventSet created 1
GO_MolecularFunction created 1
PathwayVertex created 1
ReferenceSequence created 1
FragmentDeletionModification created 1
ExternalOntology created 1
GroupModifiedResidue created 1
ModifiedResidue created 1
FunctionalStatus created 1
PositiveRegulation created 1
ReferenceRNASequence created 1
_Release created 1
Polymer created 1
EntityVertex created 1
TranslationalModification created 1
Edge created 1
ReferenceIsoform created 1
Reaction created 1
GeneticallyModifiedResidue created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.