Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Regulation reviewed +
EntitySet reviewed +
PhysicalEntity reviewed +
Pathway reviewed +
Requirement reviewed +
CandidateSet reviewed +
Polymer reviewed +
Complex reviewed +
OpenSet reviewed +
GenomeEncodedEntity reviewed +
ReactionlikeEvent reviewed +
Depolymerisation reviewed +
Reaction reviewed +
OtherEntity reviewed +
BlackBoxEvent reviewed +
FailedReaction reviewed +
Event reviewed +
DefinedSet reviewed +
PositiveGeneExpressionRegulation reviewed +
NegativeRegulation reviewed +
SimpleEntity reviewed +
PositiveRegulation reviewed +
EntityWithAccessionedSequence reviewed +
NegativeGeneExpressionRegulation reviewed +
Polymerisation reviewed +
Depolymerisation modified +
ReferenceSequence modified +
ControlledVocabulary modified +
IntraChainCrosslinkedResidue modified +
DatabaseObject modified +
PathwayVertex modified +
CellType modified +
GenomeEncodedEntity modified +
ReferenceIsoform modified +
Requirement modified +
GO_CellularComponent modified +
PhysicalEntity modified +
StableIdentifier modified +
ReplacedResidue modified +
VertexSearchableTerm modified +
ReactionCoordinates modified +
InterChainCrosslinkedResidue modified +
AbstractModifiedResidue modified +
PositiveRegulation modified +
Species modified +
DatabaseIdentifier modified +
Disease modified +
ReferenceMolecule modified +
PositiveGeneExpressionRegulation modified +
EvidenceType modified +
_AttributeValueBeforeChange modified +
NegativeRegulation modified +
Edge modified +
GroupModifiedResidue modified +
ReferenceEntity modified +
ModifiedResidue modified +
FunctionalStatusType modified +
EntityVertex modified +
_Deleted modified +
FrontPage modified +
FragmentDeletionModification modified +
Book modified +
Publication modified +
FragmentReplacedModification modified +
Vertex modified +
Summation modified +
CrosslinkedResidue modified +
Taxon modified +
EntityFunctionalStatus modified +
Event modified +
SequenceOntology modified +
Reaction modified +
Compartment modified +
GO_MolecularFunction modified +
GO_BiologicalProcess modified +
ExternalOntology modified +
EntityCompartment modified +
Polymer modified +
CandidateSet modified +
PathwayCoordinates modified +
ConcurrentEventSet modified +
Regulation modified +
Pathway modified +
FragmentModification modified +
EntityWithAccessionedSequence modified +
Figure modified +
GeneticallyModifiedResidue modified +
Polymerisation modified +
_Release modified +
ReactionVertex modified +
Affiliation modified +
BlackBoxEvent modified +
InstanceEdit modified +
OtherEntity modified +
ReactionlikeEvent modified +
LiteratureReference modified +
Complex modified +
ReferenceRNASequence modified +
ReferenceDNASequence modified +
OpenSet modified +
URL modified +
CatalystActivity modified +
Person modified +
ReferenceDatabase modified +
EntitySet modified +
PathwayDiagram modified +
_InstanceBeforeChange modified +
PsiMod modified +
NegativeGeneExpressionRegulation modified +
DeletedControlledVocabulary modified +
FunctionalStatus modified +
SimpleEntity modified +
DefinedSet modified +
ReferenceGeneProduct modified +
ReferenceGroup modified +
FragmentInsertionModification modified +
PathwayDiagramItem modified +
TranslationalModification modified +
FailedReaction modified +
NegativeGeneExpressionRegulation authored 1
Polymerisation authored +
EntityWithAccessionedSequence authored 1
SimpleEntity authored 1
PositiveRegulation authored 1
NegativeRegulation authored 1
DefinedSet authored 1
PositiveGeneExpressionRegulation authored 1
Event authored +
FailedReaction authored +
BlackBoxEvent authored +
OtherEntity authored 1
Reaction authored +
Depolymerisation authored +
GenomeEncodedEntity authored 1
ReactionlikeEvent authored +
OpenSet authored 1
Requirement authored 1
CandidateSet authored 1
Polymer authored 1
Complex authored 1
Pathway authored +
Regulation authored 1
EntitySet authored 1
PhysicalEntity authored 1
NegativeRegulation revised +
DefinedSet revised +
PositiveGeneExpressionRegulation revised +
Event revised +
FailedReaction revised +
BlackBoxEvent revised +
NegativeGeneExpressionRegulation revised +
Polymerisation revised +
EntityWithAccessionedSequence revised +
SimpleEntity revised +
PositiveRegulation revised +
OpenSet revised +
Polymer revised +
Requirement revised +
CandidateSet revised +
Complex revised +
Pathway revised +
Regulation revised +
PhysicalEntity revised +
EntitySet revised +
Reaction revised +
OtherEntity revised +
Depolymerisation revised +
GenomeEncodedEntity revised +
ReactionlikeEvent revised +
PositiveRegulation edited +
SimpleEntity edited +
NegativeGeneExpressionRegulation edited +
Polymerisation edited +
EntityWithAccessionedSequence edited +
Event edited +
BlackBoxEvent edited +
FailedReaction edited +
NegativeRegulation edited +
DefinedSet edited +
PositiveGeneExpressionRegulation edited +
GenomeEncodedEntity edited +
ReactionlikeEvent edited +
Reaction edited +
OtherEntity edited +
Depolymerisation edited +
Pathway edited +
Regulation edited +
EntitySet edited +
PhysicalEntity edited +
OpenSet edited +
CandidateSet edited +
Requirement edited +
Polymer edited +
Complex edited +
_InstanceBeforeChange instanceEdit 1
URL created 1
CatalystActivity created 1
ReferenceDNASequence created 1
OpenSet created 1
ReferenceRNASequence created 1
Complex created 1
LiteratureReference created 1
EntitySet created 1
ReferenceDatabase created 1
PathwayDiagram created 1
Person created 1
OtherEntity created 1
InstanceEdit created 1
ReactionlikeEvent created 1
TranslationalModification created 1
FragmentInsertionModification created 1
PathwayDiagramItem created 1
DefinedSet created 1
ReferenceGeneProduct created 1
ReferenceGroup created 1
FailedReaction created 1
DeletedControlledVocabulary created 1
NegativeGeneExpressionRegulation created 1
PsiMod created 1
_InstanceBeforeChange created 1
SimpleEntity created 1
FunctionalStatus created 1
PathwayCoordinates created 1
ConcurrentEventSet created 1
EntityCompartment created 1
Polymer created 1
CandidateSet created 1
Pathway created 1
Regulation created 1
Compartment created 1
Reaction created 1
SequenceOntology created 1
GO_BiologicalProcess created 1
ExternalOntology created 1
GO_MolecularFunction created 1
ReactionVertex created 1
_Release created 1
BlackBoxEvent created 1
Affiliation created 1
Polymerisation created 1
GeneticallyModifiedResidue created 1
Figure created 1
FragmentModification created 1
EntityWithAccessionedSequence created 1
FunctionalStatusType created 1
EntityVertex created 1
Book created 1
FragmentDeletionModification created 1
FrontPage created 1
_Deleted created 1
GroupModifiedResidue created 1
ReferenceEntity created 1
Edge created 1
ModifiedResidue created 1
Event created 1
EntityFunctionalStatus created 1
FragmentReplacedModification created 1
Publication created 1
Taxon created 1
CrosslinkedResidue created 1
Summation created 1
Vertex created 1
GO_CellularComponent created 1
Requirement created 1
StableIdentifier created 1
PhysicalEntity created 1
PathwayVertex created 1
IntraChainCrosslinkedResidue created 1
DatabaseObject created 1
ReferenceSequence created 1
ControlledVocabulary created 1
Depolymerisation created 1
ReferenceIsoform created 1
GenomeEncodedEntity created 1
CellType created 1
NegativeRegulation created 1
_AttributeValueBeforeChange created 1
EvidenceType created 1
PositiveGeneExpressionRegulation created 1
Disease created 1
ReferenceMolecule created 1
DatabaseIdentifier created 1
VertexSearchableTerm created 1
ReplacedResidue created 1
Species created 1
PositiveRegulation created 1
AbstractModifiedResidue created 1
ReactionCoordinates created 1
InterChainCrosslinkedResidue created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.