Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
FunctionalStatusType modified +
FragmentDeletionModification modified +
Requirement modified +
CellType modified +
Reaction modified +
VertexSearchableTerm modified +
ControlledVocabulary modified +
EntityVertex modified +
ReferenceGeneProduct modified +
_AttributeValueBeforeChange modified +
PathwayVertex modified +
PhysicalEntity modified +
EntityFunctionalStatus modified +
Compartment modified +
DatabaseIdentifier modified +
ReferenceEntity modified +
_InstanceBeforeChange modified +
ModifiedResidue modified +
Figure modified +
ReferenceRNASequence modified +
BlackBoxEvent modified +
Disease modified +
ReactionVertex modified +
FragmentInsertionModification modified +
Depolymerisation modified +
InstanceEdit modified +
ReactionCoordinates modified +
CandidateSet modified +
AbstractModifiedResidue modified +
DefinedSet modified +
Book modified +
Edge modified +
NegativeGeneExpressionRegulation modified +
Pathway modified +
_Deleted modified +
PsiMod modified +
NegativeRegulation modified +
GeneticallyModifiedResidue modified +
_Release modified +
ExternalOntology modified +
ReferenceDatabase modified +
PathwayDiagram modified +
DatabaseObject modified +
OpenSet modified +
ReferenceDNASequence modified +
CatalystActivity modified +
GroupModifiedResidue modified +
EntityCompartment modified +
Species modified +
FunctionalStatus modified +
CrosslinkedResidue modified +
ConcurrentEventSet modified +
GO_CellularComponent modified +
Complex modified +
IntraChainCrosslinkedResidue modified +
SimpleEntity modified +
GenomeEncodedEntity modified +
TranslationalModification modified +
ReactionlikeEvent modified +
EntityWithAccessionedSequence modified +
FrontPage modified +
ReferenceIsoform modified +
PositiveGeneExpressionRegulation modified +
ReferenceSequence modified +
Summation modified +
InterChainCrosslinkedResidue modified +
PathwayDiagramItem modified +
URL modified +
Taxon modified +
Polymer modified +
FragmentModification modified +
StableIdentifier modified +
Polymerisation modified +
Regulation modified +
PathwayCoordinates modified +
ReplacedResidue modified +
Event modified +
EvidenceType modified +
Person modified +
ReferenceGroup modified +
FragmentReplacedModification modified +
Affiliation modified +
PositiveRegulation modified +
DeletedControlledVocabulary modified +
GO_BiologicalProcess modified +
ReferenceMolecule modified +
OtherEntity modified +
Vertex modified +
EntitySet modified +
LiteratureReference modified +
GO_MolecularFunction modified +
SequenceOntology modified +
Publication modified +
FailedReaction modified +
EntityWithAccessionedSequence reviewed +
PhysicalEntity reviewed +
NegativeGeneExpressionRegulation reviewed +
Pathway reviewed +
ReactionlikeEvent reviewed +
PositiveGeneExpressionRegulation reviewed +
NegativeRegulation reviewed +
Event reviewed +
Complex reviewed +
GenomeEncodedEntity reviewed +
SimpleEntity reviewed +
Requirement reviewed +
Reaction reviewed +
Polymer reviewed +
Depolymerisation reviewed +
EntitySet reviewed +
FailedReaction reviewed +
DefinedSet reviewed +
Regulation reviewed +
CandidateSet reviewed +
Polymerisation reviewed +
PositiveRegulation reviewed +
OpenSet reviewed +
OtherEntity reviewed +
BlackBoxEvent reviewed +
_InstanceBeforeChange instanceEdit 1
BlackBoxEvent edited +
OtherEntity edited +
OpenSet edited +
PositiveRegulation edited +
Polymerisation edited +
CandidateSet edited +
FailedReaction edited +
Regulation edited +
DefinedSet edited +
EntitySet edited +
Polymer edited +
Depolymerisation edited +
SimpleEntity edited +
Reaction edited +
Requirement edited +
GenomeEncodedEntity edited +
Complex edited +
Event edited +
NegativeRegulation edited +
PositiveGeneExpressionRegulation edited +
NegativeGeneExpressionRegulation edited +
ReactionlikeEvent edited +
Pathway edited +
PhysicalEntity edited +
EntityWithAccessionedSequence edited +
EntityWithAccessionedSequence revised +
ReactionlikeEvent revised +
PhysicalEntity revised +
NegativeGeneExpressionRegulation revised +
Pathway revised +
PositiveGeneExpressionRegulation revised +
NegativeRegulation revised +
Event revised +
Complex revised +
GenomeEncodedEntity revised +
Reaction revised +
Requirement revised +
SimpleEntity revised +
Depolymerisation revised +
Polymer revised +
EntitySet revised +
DefinedSet revised +
Regulation revised +
FailedReaction revised +
Polymerisation revised +
CandidateSet revised +
PositiveRegulation revised +
OpenSet revised +
OtherEntity revised +
BlackBoxEvent revised +
PositiveRegulation authored 1
OpenSet authored 1
OtherEntity authored 1
BlackBoxEvent authored +
Depolymerisation authored +
Polymer authored 1
EntitySet authored 1
Regulation authored 1
DefinedSet authored 1
FailedReaction authored +
CandidateSet authored 1
Polymerisation authored +
Event authored +
Complex authored 1
GenomeEncodedEntity authored 1
Requirement authored 1
Reaction authored +
SimpleEntity authored 1
EntityWithAccessionedSequence authored 1
ReactionlikeEvent authored +
PhysicalEntity authored 1
Pathway authored +
NegativeGeneExpressionRegulation authored 1
NegativeRegulation authored 1
PositiveGeneExpressionRegulation authored 1
URL created 1
InterChainCrosslinkedResidue created 1
Summation created 1
ReferenceSequence created 1
PathwayDiagramItem created 1
Regulation created 1
PathwayCoordinates created 1
StableIdentifier created 1
Polymerisation created 1
Polymer created 1
Taxon created 1
FragmentModification created 1
GenomeEncodedEntity created 1
SimpleEntity created 1
IntraChainCrosslinkedResidue created 1
ConcurrentEventSet created 1
Complex created 1
GO_CellularComponent created 1
PositiveGeneExpressionRegulation created 1
ReferenceIsoform created 1
FrontPage created 1
EntityWithAccessionedSequence created 1
TranslationalModification created 1
ReactionlikeEvent created 1
Vertex created 1
OtherEntity created 1
ReferenceMolecule created 1
DeletedControlledVocabulary created 1
GO_BiologicalProcess created 1
PositiveRegulation created 1
SequenceOntology created 1
FailedReaction created 1
Publication created 1
LiteratureReference created 1
GO_MolecularFunction created 1
EntitySet created 1
Person created 1
ReferenceGroup created 1
Event created 1
EvidenceType created 1
ReplacedResidue created 1
Affiliation created 1
FragmentReplacedModification created 1
ReactionVertex created 1
ReferenceRNASequence created 1
BlackBoxEvent created 1
Disease created 1
_InstanceBeforeChange created 1
ModifiedResidue created 1
Figure created 1
DefinedSet created 1
ReactionCoordinates created 1
InstanceEdit created 1
AbstractModifiedResidue created 1
CandidateSet created 1
FragmentInsertionModification created 1
Depolymerisation created 1
ControlledVocabulary created 1
EntityVertex created 1
ReferenceGeneProduct created 1
CellType created 1
Reaction created 1
Requirement created 1
VertexSearchableTerm created 1
FunctionalStatusType created 1
FragmentDeletionModification created 1
DatabaseIdentifier created 1
ReferenceEntity created 1
Compartment created 1
EntityFunctionalStatus created 1
PathwayVertex created 1
_AttributeValueBeforeChange created 1
PhysicalEntity created 1
CatalystActivity created 1
ReferenceDNASequence created 1
OpenSet created 1
DatabaseObject created 1
PathwayDiagram created 1
ExternalOntology created 1
ReferenceDatabase created 1
CrosslinkedResidue created 1
Species created 1
FunctionalStatus created 1
GroupModifiedResidue created 1
EntityCompartment created 1
Book created 1
Edge created 1
_Release created 1
NegativeRegulation created 1
GeneticallyModifiedResidue created 1
PsiMod created 1
_Deleted created 1
NegativeGeneExpressionRegulation created 1
Pathway created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.