Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
AbstractModifiedResidue created 1
FragmentInsertionModification created 1
TranslationalModification created 1
GeneticallyModifiedResidue created 1
Person created 1
CatalystActivity created 1
FailedReaction created 1
Publication created 1
_Deleted created 1
GO_CellularComponent created 1
PathwayDiagramItem created 1
DefinedSet created 1
EntityVertex created 1
CellType created 1
OpenSet created 1
FunctionalStatus created 1
EntityWithAccessionedSequence created 1
NegativeRegulation created 1
URL created 1
Regulation created 1
FrontPage created 1
ReactionCoordinates created 1
Depolymerisation created 1
SequenceOntology created 1
ExternalOntology created 1
PathwayVertex created 1
ModifiedResidue created 1
ReactionVertex created 1
_Release created 1
Taxon created 1
Compartment created 1
InstanceEdit created 1
Polymer created 1
ReferenceDNASequence created 1
FragmentModification created 1
Complex created 1
StableIdentifier created 1
PositiveGeneExpressionRegulation created 1
ReferenceGeneProduct created 1
ReferenceSequence created 1
GroupModifiedResidue created 1
NegativeGeneExpressionRegulation created 1
PathwayCoordinates created 1
Disease created 1
ReferenceIsoform created 1
_AttributeValueBeforeChange created 1
OtherEntity created 1
Requirement created 1
DatabaseIdentifier created 1
Figure created 1
BlackBoxEvent created 1
PsiMod created 1
CandidateSet created 1
Edge created 1
EvidenceType created 1
_InstanceBeforeChange created 1
Reaction created 1
EntityCompartment created 1
ConcurrentEventSet created 1
ReactionlikeEvent created 1
GenomeEncodedEntity created 1
ControlledVocabulary created 1
Pathway created 1
PositiveRegulation created 1
Book created 1
EntityFunctionalStatus created 1
CrosslinkedResidue created 1
Affiliation created 1
SimpleEntity created 1
ReferenceEntity created 1
VertexSearchableTerm created 1
PathwayDiagram created 1
FragmentDeletionModification created 1
FragmentReplacedModification created 1
Summation created 1
Vertex created 1
EntitySet created 1
ReferenceGroup created 1
InterChainCrosslinkedResidue created 1
ReferenceMolecule created 1
ReferenceDatabase created 1
DatabaseObject created 1
ReplacedResidue created 1
Species created 1
IntraChainCrosslinkedResidue created 1
LiteratureReference created 1
DeletedControlledVocabulary created 1
GO_BiologicalProcess created 1
FunctionalStatusType created 1
Polymerisation created 1
PhysicalEntity created 1
Event created 1
GO_MolecularFunction created 1
ReferenceRNASequence created 1
BlackBoxEvent edited +
PositiveRegulation edited +
Requirement edited +
Polymer edited +
FailedReaction edited +
SimpleEntity edited +
DefinedSet edited +
CandidateSet edited +
Complex edited +
PositiveGeneExpressionRegulation edited +
OpenSet edited +
EntitySet edited +
EntityWithAccessionedSequence edited +
NegativeRegulation edited +
Reaction edited +
ReactionlikeEvent edited +
OtherEntity edited +
GenomeEncodedEntity edited +
NegativeGeneExpressionRegulation edited +
Regulation edited +
PhysicalEntity edited +
Polymerisation edited +
Event edited +
Pathway edited +
Depolymerisation edited +
Polymer authored 1
PositiveRegulation authored 1
Requirement authored 1
BlackBoxEvent authored +
Complex authored 1
CandidateSet authored 1
DefinedSet authored 1
SimpleEntity authored 1
FailedReaction authored +
Reaction authored +
NegativeRegulation authored 1
EntityWithAccessionedSequence authored 1
EntitySet authored 1
OpenSet authored 1
PositiveGeneExpressionRegulation authored 1
Depolymerisation authored +
Pathway authored +
PhysicalEntity authored 1
Event authored +
Polymerisation authored +
Regulation authored 1
NegativeGeneExpressionRegulation authored 1
OtherEntity authored 1
GenomeEncodedEntity authored 1
ReactionlikeEvent authored +
BlackBoxEvent reviewed +
Requirement reviewed +
PositiveRegulation reviewed +
Polymer reviewed +
FailedReaction reviewed +
SimpleEntity reviewed +
DefinedSet reviewed +
CandidateSet reviewed +
Complex reviewed +
PositiveGeneExpressionRegulation reviewed +
OpenSet reviewed +
EntitySet reviewed +
EntityWithAccessionedSequence reviewed +
NegativeRegulation reviewed +
Reaction reviewed +
ReactionlikeEvent reviewed +
OtherEntity reviewed +
GenomeEncodedEntity reviewed +
Regulation reviewed +
NegativeGeneExpressionRegulation reviewed +
PhysicalEntity reviewed +
Polymerisation reviewed +
Event reviewed +
Pathway reviewed +
Depolymerisation reviewed +
Edge modified +
EvidenceType modified +
_InstanceBeforeChange modified +
Reaction modified +
EntityCompartment modified +
ConcurrentEventSet modified +
ReactionlikeEvent modified +
GenomeEncodedEntity modified +
ControlledVocabulary modified +
Pathway modified +
Requirement modified +
DatabaseIdentifier modified +
Figure modified +
BlackBoxEvent modified +
PsiMod modified +
CandidateSet modified +
Vertex modified +
Summation modified +
EntitySet modified +
ReferenceGroup modified +
InterChainCrosslinkedResidue modified +
ReferenceMolecule modified +
ReferenceDatabase modified +
DatabaseObject modified +
Species modified +
ReplacedResidue modified +
LiteratureReference modified +
IntraChainCrosslinkedResidue modified +
GO_BiologicalProcess modified +
DeletedControlledVocabulary modified +
FunctionalStatusType modified +
Event modified +
PhysicalEntity modified +
Polymerisation modified +
GO_MolecularFunction modified +
ReferenceRNASequence modified +
PositiveRegulation modified +
Book modified +
EntityFunctionalStatus modified +
CrosslinkedResidue modified +
Affiliation modified +
SimpleEntity modified +
ReferenceEntity modified +
PathwayDiagram modified +
VertexSearchableTerm modified +
FragmentDeletionModification modified +
FragmentReplacedModification modified +
EntityVertex modified +
CellType modified +
OpenSet modified +
FunctionalStatus modified +
EntityWithAccessionedSequence modified +
NegativeRegulation modified +
Regulation modified +
URL modified +
FrontPage modified +
ReactionCoordinates modified +
SequenceOntology modified +
Depolymerisation modified +
ExternalOntology modified +
ModifiedResidue modified +
PathwayVertex modified +
AbstractModifiedResidue modified +
FragmentInsertionModification modified +
TranslationalModification modified +
GeneticallyModifiedResidue modified +
Person modified +
CatalystActivity modified +
FailedReaction modified +
Publication modified +
_Deleted modified +
GO_CellularComponent modified +
PathwayDiagramItem modified +
DefinedSet modified +
ReferenceGeneProduct modified +
PositiveGeneExpressionRegulation modified +
ReferenceSequence modified +
ReferenceIsoform modified +
GroupModifiedResidue modified +
NegativeGeneExpressionRegulation modified +
PathwayCoordinates modified +
Disease modified +
_AttributeValueBeforeChange modified +
OtherEntity modified +
ReactionVertex modified +
_Release modified +
Taxon modified +
Compartment modified +
InstanceEdit modified +
ReferenceDNASequence modified +
Polymer modified +
FragmentModification modified +
Complex modified +
StableIdentifier modified +
_InstanceBeforeChange instanceEdit 1
Depolymerisation revised +
Pathway revised +
NegativeGeneExpressionRegulation revised +
Regulation revised +
Event revised +
PhysicalEntity revised +
Polymerisation revised +
ReactionlikeEvent revised +
GenomeEncodedEntity revised +
OtherEntity revised +
Reaction revised +
EntityWithAccessionedSequence revised +
NegativeRegulation revised +
EntitySet revised +
PositiveGeneExpressionRegulation revised +
OpenSet revised +
Complex revised +
DefinedSet revised +
CandidateSet revised +
SimpleEntity revised +
FailedReaction revised +
Polymer revised +
PositiveRegulation revised +
Requirement revised +
BlackBoxEvent revised +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.