Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
PhysicalEntity reviewed +
CandidateSet reviewed +
FailedReaction reviewed +
Regulation reviewed +
ReactionlikeEvent reviewed +
SimpleEntity reviewed +
BlackBoxEvent reviewed +
Requirement reviewed +
Polymer reviewed +
NegativeGeneExpressionRegulation reviewed +
OtherEntity reviewed +
NegativeRegulation reviewed +
EntityWithAccessionedSequence reviewed +
OpenSet reviewed +
Event reviewed +
Pathway reviewed +
Depolymerisation reviewed +
EntitySet reviewed +
PositiveRegulation reviewed +
Reaction reviewed +
Complex reviewed +
PositiveGeneExpressionRegulation reviewed +
Polymerisation reviewed +
DefinedSet reviewed +
GenomeEncodedEntity reviewed +
Reaction revised +
PositiveRegulation revised +
EntitySet revised +
Depolymerisation revised +
Pathway revised +
GenomeEncodedEntity revised +
DefinedSet revised +
Polymerisation revised +
PositiveGeneExpressionRegulation revised +
Complex revised +
BlackBoxEvent revised +
SimpleEntity revised +
Regulation revised +
PhysicalEntity revised +
CandidateSet revised +
FailedReaction revised +
ReactionlikeEvent revised +
OpenSet revised +
EntityWithAccessionedSequence revised +
Event revised +
NegativeRegulation revised +
OtherEntity revised +
NegativeGeneExpressionRegulation revised +
Polymer revised +
Requirement revised +
PositiveRegulation edited +
Reaction edited +
Depolymerisation edited +
Pathway edited +
EntitySet edited +
Polymerisation edited +
DefinedSet edited +
GenomeEncodedEntity edited +
Complex edited +
PositiveGeneExpressionRegulation edited +
SimpleEntity edited +
BlackBoxEvent edited +
Regulation edited +
PhysicalEntity edited +
CandidateSet edited +
ReactionlikeEvent edited +
FailedReaction edited +
NegativeGeneExpressionRegulation edited +
OtherEntity edited +
NegativeRegulation edited +
OpenSet edited +
EntityWithAccessionedSequence edited +
Event edited +
Requirement edited +
Polymer edited +
DeletedControlledVocabulary modified +
GenomeEncodedEntity modified +
GroupModifiedResidue modified +
Polymerisation modified +
Taxon modified +
_AttributeValueBeforeChange modified +
Edge modified +
Species modified +
ReferenceGroup modified +
ReferenceMolecule modified +
Compartment modified +
EvidenceType modified +
GeneticallyModifiedResidue modified +
Publication modified +
NegativeRegulation modified +
FunctionalStatus modified +
CrosslinkedResidue modified +
OtherEntity modified +
Polymer modified +
ReferenceDatabase modified +
URL modified +
LiteratureReference modified +
IntraChainCrosslinkedResidue modified +
CatalystActivity modified +
DefinedSet modified +
FragmentReplacedModification modified +
FragmentInsertionModification modified +
DatabaseIdentifier modified +
ReactionVertex modified +
ExternalOntology modified +
Complex modified +
Reaction modified +
PsiMod modified +
_Release modified +
EntityCompartment modified +
EntitySet modified +
InstanceEdit modified +
CellType modified +
Depolymerisation modified +
StableIdentifier modified +
Event modified +
InterChainCrosslinkedResidue modified +
VertexSearchableTerm modified +
Affiliation modified +
PathwayVertex modified +
ConcurrentEventSet modified +
Person modified +
ReferenceIsoform modified +
TranslationalModification modified +
PositiveGeneExpressionRegulation modified +
Figure modified +
DatabaseObject modified +
GO_BiologicalProcess modified +
GO_CellularComponent modified +
PositiveRegulation modified +
ReferenceEntity modified +
ControlledVocabulary modified +
EntityWithAccessionedSequence modified +
OpenSet modified +
ReferenceRNASequence modified +
ReferenceSequence modified +
FragmentModification modified +
FragmentDeletionModification modified +
ReferenceDNASequence modified +
PathwayDiagram modified +
EntityVertex modified +
SequenceOntology modified +
EntityFunctionalStatus modified +
Summation modified +
PhysicalEntity modified +
CandidateSet modified +
ReactionCoordinates modified +
Vertex modified +
FrontPage modified +
ReplacedResidue modified +
GO_MolecularFunction modified +
PathwayCoordinates modified +
FunctionalStatusType modified +
ReferenceGeneProduct modified +
ModifiedResidue modified +
Book modified +
_Deleted modified +
_InstanceBeforeChange modified +
Pathway modified +
AbstractModifiedResidue modified +
NegativeGeneExpressionRegulation modified +
Disease modified +
Requirement modified +
SimpleEntity modified +
BlackBoxEvent modified +
Regulation modified +
ReactionlikeEvent modified +
FailedReaction modified +
PathwayDiagramItem modified +
_InstanceBeforeChange instanceEdit 1
GenomeEncodedEntity authored 1
DefinedSet authored 1
Polymerisation authored +
PositiveGeneExpressionRegulation authored 1
Complex authored 1
Reaction authored +
PositiveRegulation authored 1
EntitySet authored 1
Pathway authored +
Depolymerisation authored +
Event authored +
EntityWithAccessionedSequence authored 1
OpenSet authored 1
NegativeRegulation authored 1
OtherEntity authored 1
NegativeGeneExpressionRegulation authored 1
Polymer authored 1
Requirement authored 1
SimpleEntity authored 1
BlackBoxEvent authored +
PhysicalEntity authored 1
ReactionlikeEvent authored +
CandidateSet authored 1
FailedReaction authored +
Regulation authored 1
Species created 1
ReferenceGroup created 1
ReferenceMolecule created 1
Compartment created 1
EvidenceType created 1
GeneticallyModifiedResidue created 1
Publication created 1
DeletedControlledVocabulary created 1
GenomeEncodedEntity created 1
GroupModifiedResidue created 1
Polymerisation created 1
Taxon created 1
_AttributeValueBeforeChange created 1
Edge created 1
IntraChainCrosslinkedResidue created 1
CatalystActivity created 1
FunctionalStatus created 1
CrosslinkedResidue created 1
NegativeRegulation created 1
OtherEntity created 1
Polymer created 1
ReferenceDatabase created 1
LiteratureReference created 1
URL created 1
Reaction created 1
PsiMod created 1
_Release created 1
EntityCompartment created 1
EntitySet created 1
InstanceEdit created 1
CellType created 1
Depolymerisation created 1
DefinedSet created 1
FragmentReplacedModification created 1
FragmentInsertionModification created 1
DatabaseIdentifier created 1
ReactionVertex created 1
ExternalOntology created 1
Complex created 1
PathwayVertex created 1
ConcurrentEventSet created 1
Person created 1
StableIdentifier created 1
Event created 1
InterChainCrosslinkedResidue created 1
VertexSearchableTerm created 1
Affiliation created 1
GO_BiologicalProcess created 1
GO_CellularComponent created 1
PositiveRegulation created 1
ReferenceEntity created 1
ControlledVocabulary created 1
ReferenceIsoform created 1
TranslationalModification created 1
PositiveGeneExpressionRegulation created 1
Figure created 1
DatabaseObject created 1
EntityVertex created 1
SequenceOntology created 1
EntityFunctionalStatus created 1
Summation created 1
CandidateSet created 1
PhysicalEntity created 1
Vertex created 1
ReactionCoordinates created 1
EntityWithAccessionedSequence created 1
OpenSet created 1
ReferenceRNASequence created 1
ReferenceSequence created 1
FragmentModification created 1
FragmentDeletionModification created 1
ReferenceDNASequence created 1
PathwayDiagram created 1
FunctionalStatusType created 1
ReferenceGeneProduct created 1
ModifiedResidue created 1
Book created 1
_InstanceBeforeChange created 1
_Deleted created 1
Pathway created 1
FrontPage created 1
ReplacedResidue created 1
GO_MolecularFunction created 1
PathwayCoordinates created 1
SimpleEntity created 1
BlackBoxEvent created 1
Regulation created 1
FailedReaction created 1
ReactionlikeEvent created 1
PathwayDiagramItem created 1
AbstractModifiedResidue created 1
NegativeGeneExpressionRegulation created 1
Disease created 1
Requirement created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.