Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Depolymerisation edited +
Polymer edited +
Event edited +
EntityWithAccessionedSequence edited +
Complex edited +
NegativeRegulation edited +
Pathway edited +
PositiveGeneExpressionRegulation edited +
BlackBoxEvent edited +
RNADrug edited +
Reaction edited +
Requirement edited +
PositiveRegulation edited +
EntitySet edited +
FailedReaction edited +
ReactionlikeEvent edited +
DefinedSet edited +
ProteinDrug edited +
Regulation edited +
Drug edited +
OtherEntity edited +
GenomeEncodedEntity edited +
OpenSet edited +
NegativeGeneExpressionRegulation edited +
CandidateSet edited +
PhysicalEntity edited +
SimpleEntity edited +
ChemicalDrug edited +
Polymerisation edited +
OpenSet reviewed +
NegativeGeneExpressionRegulation reviewed +
CandidateSet reviewed +
PhysicalEntity reviewed +
SimpleEntity reviewed +
ChemicalDrug reviewed +
Polymerisation reviewed +
DefinedSet reviewed +
ProteinDrug reviewed +
Regulation reviewed +
Drug reviewed +
OtherEntity reviewed +
GenomeEncodedEntity reviewed +
BlackBoxEvent reviewed +
PositiveGeneExpressionRegulation reviewed +
Pathway reviewed +
RNADrug reviewed +
Reaction reviewed +
Requirement reviewed +
EntitySet reviewed +
PositiveRegulation reviewed +
FailedReaction reviewed +
ReactionlikeEvent reviewed +
Depolymerisation reviewed +
Polymer reviewed +
Event reviewed +
EntityWithAccessionedSequence reviewed +
Complex reviewed +
NegativeRegulation reviewed +
_InstanceBeforeChange instanceEdit 1
GenomeEncodedEntity revised +
Regulation revised +
DefinedSet revised +
ProteinDrug revised +
OtherEntity revised +
Drug revised +
Polymerisation revised +
ChemicalDrug revised +
SimpleEntity revised +
NegativeGeneExpressionRegulation revised +
OpenSet revised +
PhysicalEntity revised +
CandidateSet revised +
Complex revised +
NegativeRegulation revised +
Depolymerisation revised +
EntityWithAccessionedSequence revised +
Event revised +
Polymer revised +
FailedReaction revised +
ReactionlikeEvent revised +
PositiveRegulation revised +
EntitySet revised +
Pathway revised +
PositiveGeneExpressionRegulation revised +
BlackBoxEvent revised +
Requirement revised +
Reaction revised +
RNADrug revised +
Compartment created 1
PositiveRegulation created 1
EntitySet created 1
ReplacedResidue created 1
PathwayDiagramItem created 1
BlackBoxEvent created 1
ReferenceDatabase created 1
Requirement created 1
RNADrug created 1
TranslationalModification created 1
ReferenceTherapeutic created 1
Depolymerisation created 1
_Release created 1
Event created 1
SimpleEntity created 1
EntityVertex created 1
ReferenceDNASequence created 1
CrosslinkedResidue created 1
VertexSearchableTerm created 1
OpenSet created 1
Affiliation created 1
PsiMod created 1
FrontPage created 1
Book created 1
EvidenceType created 1
ReferenceGeneProduct created 1
DatabaseObject created 1
ExternalOntology created 1
DefinedSet created 1
Vertex created 1
Person created 1
PathwayDiagram created 1
DeletedControlledVocabulary created 1
ReferenceSequence created 1
FunctionalStatus created 1
Species created 1
PathwayCoordinates created 1
GroupModifiedResidue created 1
DatabaseIdentifier created 1
NegativeRegulation created 1
LiteratureReference created 1
_Deleted created 1
InterChainCrosslinkedResidue created 1
FragmentDeletionModification created 1
PhysicalEntity created 1
URL created 1
AbstractModifiedResidue created 1
ReactionCoordinates created 1
ProteinDrug created 1
OtherEntity created 1
Drug created 1
Taxon created 1
Pathway created 1
FragmentReplacedModification created 1
Reaction created 1
ReferenceEntity created 1
ControlledVocabulary created 1
EntityFunctionalStatus created 1
Publication created 1
ModifiedResidue created 1
Polymer created 1
ReferenceIsoform created 1
_InstanceBeforeChange created 1
NegativeGeneExpressionRegulation created 1
Summation created 1
CandidateSet created 1
Figure created 1
FragmentInsertionModification created 1
ReferenceGroup created 1
ReactionlikeEvent created 1
FailedReaction created 1
InstanceEdit created 1
CellType created 1
SequenceOntology created 1
FragmentModification created 1
PositiveGeneExpressionRegulation created 1
GO_BiologicalProcess created 1
ReferenceMolecule created 1
ReferenceRNASequence created 1
EntityCompartment created 1
Edge created 1
Complex created 1
Disease created 1
GeneticallyModifiedResidue created 1
ReactionVertex created 1
EntityWithAccessionedSequence created 1
GO_CellularComponent created 1
ChemicalDrug created 1
Polymerisation created 1
GO_MolecularFunction created 1
StableIdentifier created 1
IntraChainCrosslinkedResidue created 1
CatalystActivity created 1
PathwayVertex created 1
GenomeEncodedEntity created 1
Regulation created 1
ConcurrentEventSet created 1
_AttributeValueBeforeChange created 1
FunctionalStatusType created 1
DatabaseIdentifier modified +
NegativeRegulation modified +
LiteratureReference modified +
PathwayDiagram modified +
DeletedControlledVocabulary modified +
ReferenceSequence modified +
Species modified +
FunctionalStatus modified +
GroupModifiedResidue modified +
PathwayCoordinates modified +
URL modified +
AbstractModifiedResidue modified +
ReactionCoordinates modified +
ProteinDrug modified +
OtherEntity modified +
Taxon modified +
Drug modified +
_Deleted modified +
InterChainCrosslinkedResidue modified +
FragmentDeletionModification modified +
PhysicalEntity modified +
TranslationalModification modified +
ReferenceTherapeutic modified +
Depolymerisation modified +
_Release modified +
Event modified +
Compartment modified +
PositiveRegulation modified +
EntitySet modified +
PathwayDiagramItem modified +
ReplacedResidue modified +
ReferenceDatabase modified +
BlackBoxEvent modified +
Requirement modified +
RNADrug modified +
FrontPage modified +
PsiMod modified +
Book modified +
ReferenceGeneProduct modified +
EvidenceType modified +
DefinedSet modified +
DatabaseObject modified +
ExternalOntology modified +
Person modified +
Vertex modified +
SimpleEntity modified +
EntityVertex modified +
ReferenceDNASequence modified +
VertexSearchableTerm modified +
CrosslinkedResidue modified +
OpenSet modified +
Affiliation modified +
EntityCompartment modified +
Edge modified +
Complex modified +
Disease modified +
GeneticallyModifiedResidue modified +
ReactionVertex modified +
EntityWithAccessionedSequence modified +
GO_CellularComponent modified +
ReactionlikeEvent modified +
FailedReaction modified +
InstanceEdit modified +
CellType modified +
SequenceOntology modified +
FragmentModification modified +
PositiveGeneExpressionRegulation modified +
GO_BiologicalProcess modified +
ReferenceMolecule modified +
ReferenceRNASequence modified +
PathwayVertex modified +
GenomeEncodedEntity modified +
Regulation modified +
ConcurrentEventSet modified +
_AttributeValueBeforeChange modified +
FunctionalStatusType modified +
Polymerisation modified +
ChemicalDrug modified +
GO_MolecularFunction modified +
StableIdentifier modified +
CatalystActivity modified +
IntraChainCrosslinkedResidue modified +
ReferenceEntity modified +
ControlledVocabulary modified +
EntityFunctionalStatus modified +
Publication modified +
ModifiedResidue modified +
Polymer modified +
Pathway modified +
FragmentReplacedModification modified +
Reaction modified +
Figure modified +
FragmentInsertionModification modified +
ReferenceGroup modified +
ReferenceIsoform modified +
_InstanceBeforeChange modified +
Summation modified +
NegativeGeneExpressionRegulation modified +
CandidateSet modified +
ChemicalDrug authored 1
Polymerisation authored +
SimpleEntity authored 1
NegativeGeneExpressionRegulation authored 1
OpenSet authored 1
PhysicalEntity authored 1
CandidateSet authored 1
GenomeEncodedEntity authored 1
Regulation authored 1
DefinedSet authored 1
ProteinDrug authored 1
OtherEntity authored 1
Drug authored 1
ReactionlikeEvent authored +
FailedReaction authored +
EntitySet authored 1
PositiveRegulation authored 1
PositiveGeneExpressionRegulation authored 1
Pathway authored +
BlackBoxEvent authored +
Requirement authored 1
Reaction authored +
RNADrug authored 1
Complex authored 1
NegativeRegulation authored 1
Depolymerisation authored +
EntityWithAccessionedSequence authored 1
Polymer authored 1
Event authored +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.