Reactome: A Curated Pathway Database

Attributes of class 'InstanceEdit'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_applyToAllEditedInstances 1 TEXT N/A InstanceEdit   TEXT
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
author + INSTANCE Person InstanceEdit   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
dateTime 1 OTHER N/A InstanceEdit   TIMESTAMP
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
note 1 TEXT N/A InstanceEdit   TEXT
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'InstanceEdit' instances

Class name Attribute name Cardinality
Regulation modified +
Figure modified +
IntraChainCrosslinkedResidue modified +
ReferenceMolecule modified +
Complex modified +
EvidenceType modified +
TranslationalModification modified +
Polymer modified +
ReferenceGroup modified +
FragmentDeletionModification modified +
ReferenceRNASequence modified +
FailedReaction modified +
FunctionalStatus modified +
Species modified +
ChemicalDrug modified +
StableIdentifier modified +
Pathway modified +
ControlledVocabulary modified +
PsiMod modified +
Event modified +
GroupModifiedResidue modified +
ModifiedResidue modified +
PositiveRegulation modified +
Book modified +
CellType modified +
SequenceOntology modified +
DatabaseObject modified +
GenomeEncodedEntity modified +
Disease modified +
Taxon modified +
URL modified +
EntityCompartment modified +
DefinedSet modified +
ReactionVertex modified +
PathwayCoordinates modified +
Polymerisation modified +
_Release modified +
VertexSearchableTerm modified +
PhysicalEntity modified +
EntitySet modified +
Vertex modified +
ReactionlikeEvent modified +
GO_MolecularFunction modified +
CandidateSet modified +
GO_BiologicalProcess modified +
OtherEntity modified +
Person modified +
EntityFunctionalStatus modified +
NegativeRegulation modified +
InstanceEdit modified +
EntityWithAccessionedSequence modified +
ReferenceDNASequence modified +
GeneticallyModifiedResidue modified +
Publication modified +
GO_CellularComponent modified +
FragmentInsertionModification modified +
ReplacedResidue modified +
NegativeGeneExpressionRegulation modified +
FunctionalStatusType modified +
_AttributeValueBeforeChange modified +
ConcurrentEventSet modified +
CrosslinkedResidue modified +
Compartment modified +
DatabaseIdentifier modified +
ReferenceEntity modified +
PositiveGeneExpressionRegulation modified +
SimpleEntity modified +
Drug modified +
Reaction modified +
AbstractModifiedResidue modified +
FrontPage modified +
ReferenceDatabase modified +
PathwayDiagramItem modified +
FragmentReplacedModification modified +
ReactionCoordinates modified +
Affiliation modified +
InterChainCrosslinkedResidue modified +
ExternalOntology modified +
CatalystActivity modified +
Summation modified +
ReferenceGeneProduct modified +
ProteinDrug modified +
ReferenceIsoform modified +
DeletedControlledVocabulary modified +
PathwayDiagram modified +
ReferenceSequence modified +
EntityVertex modified +
LiteratureReference modified +
OpenSet modified +
Edge modified +
_InstanceBeforeChange modified +
ReferenceTherapeutic modified +
RNADrug modified +
FragmentModification modified +
Requirement modified +
BlackBoxEvent modified +
PathwayVertex modified +
Depolymerisation modified +
_Deleted modified +
ChemicalDrug reviewed +
Regulation reviewed +
Pathway reviewed +
ProteinDrug reviewed +
Event reviewed +
NegativeGeneExpressionRegulation reviewed +
PositiveRegulation reviewed +
Complex reviewed +
GenomeEncodedEntity reviewed +
Drug reviewed +
PositiveGeneExpressionRegulation reviewed +
Polymer reviewed +
DefinedSet reviewed +
SimpleEntity reviewed +
RNADrug reviewed +
EntitySet reviewed +
PhysicalEntity reviewed +
Reaction reviewed +
Polymerisation reviewed +
OpenSet reviewed +
FailedReaction reviewed +
Requirement reviewed +
BlackBoxEvent reviewed +
ReactionlikeEvent reviewed +
Depolymerisation reviewed +
NegativeRegulation reviewed +
EntityWithAccessionedSequence reviewed +
CandidateSet reviewed +
OtherEntity reviewed +
Depolymerisation authored +
EntityWithAccessionedSequence authored 1
NegativeRegulation authored 1
CandidateSet authored 1
OtherEntity authored 1
FailedReaction authored +
Requirement authored 1
BlackBoxEvent authored +
ReactionlikeEvent authored +
EntitySet authored 1
RNADrug authored 1
PhysicalEntity authored 1
OpenSet authored 1
Reaction authored +
Polymerisation authored +
Drug authored 1
PositiveGeneExpressionRegulation authored 1
SimpleEntity authored 1
Polymer authored 1
DefinedSet authored 1
Complex authored 1
GenomeEncodedEntity authored 1
NegativeGeneExpressionRegulation authored 1
PositiveRegulation authored 1
ProteinDrug authored 1
Event authored +
ChemicalDrug authored 1
Regulation authored 1
Pathway authored +
Drug edited +
PositiveGeneExpressionRegulation edited +
Polymer edited +
DefinedSet edited +
SimpleEntity edited +
RNADrug edited +
PhysicalEntity edited +
EntitySet edited +
Reaction edited +
OpenSet edited +
Polymerisation edited +
Requirement edited +
FailedReaction edited +
BlackBoxEvent edited +
ReactionlikeEvent edited +
Depolymerisation edited +
EntityWithAccessionedSequence edited +
NegativeRegulation edited +
CandidateSet edited +
OtherEntity edited +
ChemicalDrug edited +
Pathway edited +
Regulation edited +
ProteinDrug edited +
Event edited +
NegativeGeneExpressionRegulation edited +
PositiveRegulation edited +
Complex edited +
GenomeEncodedEntity edited +
_InstanceBeforeChange instanceEdit 1
PositiveRegulation revised +
NegativeGeneExpressionRegulation revised +
Complex revised +
GenomeEncodedEntity revised +
ChemicalDrug revised +
Pathway revised +
Regulation revised +
Event revised +
ProteinDrug revised +
ReactionlikeEvent revised +
FailedReaction revised +
Requirement revised +
BlackBoxEvent revised +
CandidateSet revised +
OtherEntity revised +
Depolymerisation revised +
NegativeRegulation revised +
EntityWithAccessionedSequence revised +
PositiveGeneExpressionRegulation revised +
DefinedSet revised +
Polymer revised +
SimpleEntity revised +
Drug revised +
Reaction revised +
OpenSet revised +
Polymerisation revised +
PhysicalEntity revised +
EntitySet revised +
RNADrug revised +
GenomeEncodedEntity created 1
Disease created 1
Taxon created 1
PositiveRegulation created 1
CellType created 1
Book created 1
SequenceOntology created 1
DatabaseObject created 1
PsiMod created 1
Event created 1
ControlledVocabulary created 1
GroupModifiedResidue created 1
ModifiedResidue created 1
StableIdentifier created 1
ChemicalDrug created 1
Pathway created 1
CandidateSet created 1
GO_BiologicalProcess created 1
OtherEntity created 1
Person created 1
InstanceEdit created 1
EntityFunctionalStatus created 1
NegativeRegulation created 1
EntityWithAccessionedSequence created 1
Vertex created 1
ReactionlikeEvent created 1
GO_MolecularFunction created 1
_Release created 1
Polymerisation created 1
VertexSearchableTerm created 1
EntitySet created 1
PhysicalEntity created 1
URL created 1
EntityCompartment created 1
DefinedSet created 1
ReactionVertex created 1
PathwayCoordinates created 1
Complex created 1
EvidenceType created 1
IntraChainCrosslinkedResidue created 1
ReferenceMolecule created 1
Regulation created 1
Figure created 1
Species created 1
ReferenceRNASequence created 1
FailedReaction created 1
FunctionalStatus created 1
TranslationalModification created 1
Polymer created 1
ReferenceGroup created 1
FragmentDeletionModification created 1
PathwayDiagram created 1
ReferenceSequence created 1
ReferenceIsoform created 1
DeletedControlledVocabulary created 1
ReferenceGeneProduct created 1
ProteinDrug created 1
Summation created 1
_Deleted created 1
Depolymerisation created 1
Requirement created 1
FragmentModification created 1
BlackBoxEvent created 1
PathwayVertex created 1
OpenSet created 1
_InstanceBeforeChange created 1
Edge created 1
ReferenceTherapeutic created 1
RNADrug created 1
EntityVertex created 1
LiteratureReference created 1
FunctionalStatusType created 1
_AttributeValueBeforeChange created 1
ConcurrentEventSet created 1
CrosslinkedResidue created 1
Compartment created 1
FragmentInsertionModification created 1
ReplacedResidue created 1
NegativeGeneExpressionRegulation created 1
GO_CellularComponent created 1
ReferenceDNASequence created 1
Publication created 1
GeneticallyModifiedResidue created 1
CatalystActivity created 1
ExternalOntology created 1
PathwayDiagramItem created 1
FragmentReplacedModification created 1
ReactionCoordinates created 1
InterChainCrosslinkedResidue created 1
Affiliation created 1
Reaction created 1
AbstractModifiedResidue created 1
FrontPage created 1
ReferenceDatabase created 1
DatabaseIdentifier created 1
PositiveGeneExpressionRegulation created 1
ReferenceEntity created 1
SimpleEntity created 1
Drug created 1

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.