Reactome: A Curated Pathway Database

Attributes of class 'EntityCompartment'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
accession 1 TEXT N/A GO_CellularComponent ANY TEXT
componentOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
definition 1 TEXT N/A GO_CellularComponent   TEXT
hasPart + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
instanceOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A GO_CellularComponent   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase GO_CellularComponent   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'EntityCompartment' instances

Class name Attribute name Cardinality
Complex includedLocation +
EntityCompartment componentOf +
GO_CellularComponent componentOf +
Compartment componentOf +
PhysicalEntity goCellularComponent 1
OpenSet goCellularComponent 1
SimpleEntity goCellularComponent 1
EntityWithAccessionedSequence goCellularComponent 1
EntitySet goCellularComponent 1
CandidateSet goCellularComponent 1
GenomeEncodedEntity goCellularComponent 1
Polymer goCellularComponent 1
Complex goCellularComponent 1
OtherEntity goCellularComponent 1
DefinedSet goCellularComponent 1
EntityCompartment instanceOf +
Compartment instanceOf +
GO_CellularComponent instanceOf +
Compartment hasPart +
GO_CellularComponent hasPart +
EntityCompartment hasPart +
EntityWithAccessionedSequence compartment +
SimpleEntity compartment +
Pathway compartment +
Polymerisation compartment +
FailedReaction compartment +
CandidateSet compartment +
GenomeEncodedEntity compartment +
Depolymerisation compartment +
BlackBoxEvent compartment +
EntitySet compartment +
PhysicalEntity compartment +
OpenSet compartment +
ReactionlikeEvent compartment +
Polymer compartment +
Complex compartment +
OtherEntity compartment +
Event compartment +
DefinedSet compartment +
Reaction compartment +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.