Reactome: A Curated Pathway Database

Attributes of class 'EntityCompartment'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
accession 1 TEXT N/A GO_CellularComponent ANY TEXT
componentOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
definition 1 TEXT N/A GO_CellularComponent   TEXT
hasPart + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
instanceOf + INSTANCE GO_CellularComponent GO_CellularComponent   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A GO_CellularComponent   TEXT
referenceDatabase 1 INSTANCE ReferenceDatabase GO_CellularComponent   INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED

Referers of class 'EntityCompartment' instances

Class name Attribute name Cardinality
Compartment componentOf +
GO_CellularComponent componentOf +
EntityCompartment componentOf +
PhysicalEntity goCellularComponent 1
ProteinDrug goCellularComponent 1
OpenSet goCellularComponent 1
Complex goCellularComponent 1
GenomeEncodedEntity goCellularComponent 1
RNADrug goCellularComponent 1
EntitySet goCellularComponent 1
SimpleEntity goCellularComponent 1
CandidateSet goCellularComponent 1
Drug goCellularComponent 1
Polymer goCellularComponent 1
ChemicalDrug goCellularComponent 1
DefinedSet goCellularComponent 1
EntityWithAccessionedSequence goCellularComponent 1
OtherEntity goCellularComponent 1
GO_CellularComponent hasPart +
Compartment hasPart +
EntityCompartment hasPart +
Complex includedLocation +
Compartment instanceOf +
GO_CellularComponent instanceOf +
EntityCompartment instanceOf +
Complex compartment +
CandidateSet compartment +
FailedReaction compartment +
RNADrug compartment +
SimpleEntity compartment +
Reaction compartment +
Depolymerisation compartment +
ReactionlikeEvent compartment +
Polymerisation compartment +
Pathway compartment +
DefinedSet compartment +
OtherEntity compartment +
GenomeEncodedEntity compartment +
OpenSet compartment +
ProteinDrug compartment +
Drug compartment +
Event compartment +
EntitySet compartment +
BlackBoxEvent compartment +
PhysicalEntity compartment +
EntityWithAccessionedSequence compartment +
Polymer compartment +
ChemicalDrug compartment +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.