Reactome: A Curated Pathway Database

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
BlackBoxEvent requiredInputComponent +
FailedReaction requiredInputComponent +
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
CandidateSet hasMember +
EntitySet hasMember +
OpenSet hasMember +
DefinedSet hasMember +
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
IntraChainCrosslinkedResidue modification 1
GroupModifiedResidue modification 1
Requirement regulator 1
Regulation regulator 1
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
PositiveGeneExpressionRegulation regulator 1
_Deleted replacementInstances +
EntityVertex representedInstance 1
Polymerisation input +
ReactionlikeEvent input +
Depolymerisation input +
FailedReaction input +
Reaction input +
BlackBoxEvent input +
CandidateSet hasCandidate +
CandidateSet inferredTo +
EntityWithAccessionedSequence inferredTo +
OpenSet inferredTo +
SimpleEntity inferredTo +
Complex inferredTo +
Polymer inferredTo +
OtherEntity inferredTo +
DefinedSet inferredTo +
GenomeEncodedEntity inferredTo +
PhysicalEntity inferredTo +
EntitySet inferredTo +
FailedReaction output +
BlackBoxEvent output +
Reaction output +
Depolymerisation output +
ReactionlikeEvent output +
Polymerisation output +
OpenSet inferredFrom +
SimpleEntity inferredFrom +
CandidateSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
EntitySet inferredFrom +
PhysicalEntity inferredFrom +
OtherEntity inferredFrom +
DefinedSet inferredFrom +
Polymer inferredFrom +
GenomeEncodedEntity inferredFrom +
Complex inferredFrom +
BlackBoxEvent entityOnOtherCell +
FailedReaction entityOnOtherCell +
Reaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Complex entityOnOtherCell +
Polymerisation entityOnOtherCell +
Polymer repeatedUnit +
ConcurrentEventSet focusEntity +
Complex hasComponent +
VertexSearchableTerm termProvider +
PositiveGeneExpressionRegulation activeUnit +
NegativeRegulation activeUnit +
CatalystActivity activeUnit +
Requirement activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.