Reactome: A Curated Pathway Database

Attributes of class 'DefinedSet'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity   INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasMember + INSTANCE PhysicalEntity EntitySet ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredProt 1 TEXT N/A EntitySet   TEXT
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
isOrdered 1 OTHER N/A EntitySet   ENUM('TRUE','FALSE')
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
maxHomologues 1 TEXT N/A EntitySet   TEXT
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
relatedSpecies + INSTANCE Species EntitySet   INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species + INSTANCE Species EntitySet ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT
totalProt 1 TEXT N/A EntitySet   TEXT

Referers of class 'DefinedSet' instances

Class name Attribute name Cardinality
Complex hasComponent +
CandidateSet hasCandidate +
DefinedSet hasMember +
EntitySet hasMember +
OpenSet hasMember +
CandidateSet hasMember +
Polymer repeatedUnit +
SimpleEntity inferredFrom +
Polymer inferredFrom +
ProteinDrug inferredFrom +
OtherEntity inferredFrom +
GenomeEncodedEntity inferredFrom +
RNADrug inferredFrom +
CandidateSet inferredFrom +
ChemicalDrug inferredFrom +
Complex inferredFrom +
DefinedSet inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OpenSet inferredFrom +
PhysicalEntity inferredFrom +
EntitySet inferredFrom +
Drug inferredFrom +
GroupModifiedResidue modification 1
IntraChainCrosslinkedResidue modification 1
CrosslinkedResidue modification 1
InterChainCrosslinkedResidue modification 1
Reaction input +
Polymerisation input +
FailedReaction input +
Depolymerisation input +
ReactionlikeEvent input +
BlackBoxEvent input +
RNADrug inferredTo +
GenomeEncodedEntity inferredTo +
OtherEntity inferredTo +
ProteinDrug inferredTo +
Polymer inferredTo +
SimpleEntity inferredTo +
Drug inferredTo +
EntitySet inferredTo +
EntityWithAccessionedSequence inferredTo +
OpenSet inferredTo +
PhysicalEntity inferredTo +
DefinedSet inferredTo +
Complex inferredTo +
ChemicalDrug inferredTo +
CandidateSet inferredTo +
FailedReaction output +
Depolymerisation output +
Polymerisation output +
Reaction output +
BlackBoxEvent output +
ReactionlikeEvent output +
NegativeRegulation activeUnit +
Requirement activeUnit +
Regulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
_Deleted replacementInstances +
ConcurrentEventSet focusEntity +
FailedReaction entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Complex entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
Reaction requiredInputComponent +
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
BlackBoxEvent requiredInputComponent +
EntityVertex representedInstance 1
NegativeGeneExpressionRegulation regulator 1
PositiveRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
NegativeRegulation regulator 1
Requirement regulator 1
VertexSearchableTerm termProvider +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.