Reactome: A Curated Pathway Database

Attributes of class 'EntityWithAccessionedSequence'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
endCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
hasModifiedResidue + INSTANCE AbstractModifiedResidue EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity ANY TEXT
referenceEntity 1 INSTANCE ReferenceSequence EntityWithAccessionedSequence ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species GenomeEncodedEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
startCoordinate 1 INTEGER N/A EntityWithAccessionedSequence ALL INTEGER(10)
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'EntityWithAccessionedSequence' instances

Class name Attribute name Cardinality
Polymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
Depolymerisation requiredInputComponent +
ReactionlikeEvent requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Depolymerisation entityOnOtherCell +
Complex entityOnOtherCell +
Reaction entityOnOtherCell +
FailedReaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
EntitySet inferredFrom +
Polymer inferredFrom +
RNADrug inferredFrom +
Complex inferredFrom +
ChemicalDrug inferredFrom +
CandidateSet inferredFrom +
Drug inferredFrom +
EntityWithAccessionedSequence inferredFrom +
OpenSet inferredFrom +
SimpleEntity inferredFrom +
PhysicalEntity inferredFrom +
ProteinDrug inferredFrom +
DefinedSet inferredFrom +
GenomeEncodedEntity inferredFrom +
OtherEntity inferredFrom +
PositiveRegulation regulator 1
NegativeGeneExpressionRegulation regulator 1
Regulation regulator 1
PositiveGeneExpressionRegulation regulator 1
Requirement regulator 1
NegativeRegulation regulator 1
_Deleted replacementInstances +
PhysicalEntity inferredTo +
ProteinDrug inferredTo +
DefinedSet inferredTo +
OtherEntity inferredTo +
GenomeEncodedEntity inferredTo +
SimpleEntity inferredTo +
OpenSet inferredTo +
EntityWithAccessionedSequence inferredTo +
Polymer inferredTo +
EntitySet inferredTo +
Complex inferredTo +
RNADrug inferredTo +
ChemicalDrug inferredTo +
CandidateSet inferredTo +
Drug inferredTo +
Requirement activeUnit +
NegativeGeneExpressionRegulation activeUnit +
PositiveGeneExpressionRegulation activeUnit +
Regulation activeUnit +
PositiveRegulation activeUnit +
CatalystActivity activeUnit +
NegativeRegulation activeUnit +
BlackBoxEvent input +
ReactionlikeEvent input +
Depolymerisation input +
Reaction input +
FailedReaction input +
Polymerisation input +
CatalystActivity physicalEntity 1
EntityFunctionalStatus physicalEntity 1
Polymer repeatedUnit +
EntityVertex representedInstance 1
VertexSearchableTerm termProvider +
CandidateSet hasCandidate +
Polymerisation output +
FailedReaction output +
ReactionlikeEvent output +
Depolymerisation output +
Reaction output +
BlackBoxEvent output +
Complex hasComponent +
CandidateSet hasMember +
EntitySet hasMember +
OpenSet hasMember +
DefinedSet hasMember +
ConcurrentEventSet focusEntity +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.