Reactome: A Curated Pathway Database

Attributes of class 'SimpleEntity'

Attribute name Cardinality Value type Allowed classes Attribute origin Value defines instance Db column type
DB_ID 1 INTERNAL_ID N/A DatabaseObject   INTEGER(10) UNSIGNED
_displayName 1 TEXT N/A DatabaseObject   TEXT
_timestamp 1 OTHER N/A DatabaseObject   TIMESTAMP
authored 1 INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
cellType 1 INSTANCE CellType PhysicalEntity ALL INTEGER(10) UNSIGNED
compartment + INSTANCE EntityCompartment PhysicalEntity ALL INTEGER(10) UNSIGNED
created 1 INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
crossReference + INSTANCE DatabaseIdentifier PhysicalEntity   INTEGER(10) UNSIGNED
definition 1 TEXT N/A PhysicalEntity   TEXT
disease + INSTANCE Disease PhysicalEntity   INTEGER(10) UNSIGNED
edited + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
figure + INSTANCE Figure PhysicalEntity   INTEGER(10) UNSIGNED
goCellularComponent 1 INSTANCE GO_CellularComponent PhysicalEntity   INTEGER(10) UNSIGNED
inferredFrom + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
inferredTo + INSTANCE PhysicalEntity PhysicalEntity   INTEGER(10) UNSIGNED
literatureReference + INSTANCE Publication PhysicalEntity   INTEGER(10) UNSIGNED
modified + INSTANCE InstanceEdit DatabaseObject   INTEGER(10) UNSIGNED
name + TEXT N/A PhysicalEntity   TEXT
referenceEntity 1 INSTANCE ReferenceMolecule SimpleEntity ALL INTEGER(10) UNSIGNED
reviewed + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
revised + INSTANCE InstanceEdit PhysicalEntity   INTEGER(10) UNSIGNED
species 1 INSTANCE Species SimpleEntity ALL INTEGER(10) UNSIGNED
stableIdentifier 1 INSTANCE StableIdentifier DatabaseObject   INTEGER(10) UNSIGNED
summation + INSTANCE Summation PhysicalEntity   INTEGER(10) UNSIGNED
systematicName 1 TEXT N/A PhysicalEntity   TEXT

Referers of class 'SimpleEntity' instances

Class name Attribute name Cardinality
EntityVertex representedInstance 1
Complex hasComponent +
Complex inferredTo +
OpenSet inferredTo +
Polymer inferredTo +
Drug inferredTo +
EntitySet inferredTo +
ChemicalDrug inferredTo +
CandidateSet inferredTo +
RNADrug inferredTo +
OtherEntity inferredTo +
PhysicalEntity inferredTo +
EntityWithAccessionedSequence inferredTo +
ProteinDrug inferredTo +
SimpleEntity inferredTo +
GenomeEncodedEntity inferredTo +
DefinedSet inferredTo +
VertexSearchableTerm termProvider +
CandidateSet hasCandidate +
Reaction entityOnOtherCell +
Polymerisation entityOnOtherCell +
BlackBoxEvent entityOnOtherCell +
ReactionlikeEvent entityOnOtherCell +
Complex entityOnOtherCell +
Depolymerisation entityOnOtherCell +
FailedReaction entityOnOtherCell +
Requirement activeUnit +
PositiveGeneExpressionRegulation activeUnit +
NegativeGeneExpressionRegulation activeUnit +
Regulation activeUnit +
CatalystActivity activeUnit +
NegativeRegulation activeUnit +
PositiveRegulation activeUnit +
FailedReaction output +
Depolymerisation output +
ReactionlikeEvent output +
BlackBoxEvent output +
Reaction output +
Polymerisation output +
EntitySet hasMember +
CandidateSet hasMember +
DefinedSet hasMember +
OpenSet hasMember +
ProteinDrug inferredFrom +
SimpleEntity inferredFrom +
DefinedSet inferredFrom +
GenomeEncodedEntity inferredFrom +
OtherEntity inferredFrom +
RNADrug inferredFrom +
PhysicalEntity inferredFrom +
EntityWithAccessionedSequence inferredFrom +
EntitySet inferredFrom +
ChemicalDrug inferredFrom +
CandidateSet inferredFrom +
Complex inferredFrom +
Polymer inferredFrom +
OpenSet inferredFrom +
Drug inferredFrom +
NegativeGeneExpressionRegulation regulator 1
Requirement regulator 1
PositiveGeneExpressionRegulation regulator 1
Regulation regulator 1
NegativeRegulation regulator 1
PositiveRegulation regulator 1
EntityFunctionalStatus physicalEntity 1
CatalystActivity physicalEntity 1
ConcurrentEventSet focusEntity +
_Deleted replacementInstances +
ReactionlikeEvent requiredInputComponent +
Depolymerisation requiredInputComponent +
FailedReaction requiredInputComponent +
Polymerisation requiredInputComponent +
Reaction requiredInputComponent +
BlackBoxEvent requiredInputComponent +
FailedReaction input +
Depolymerisation input +
ReactionlikeEvent input +
BlackBoxEvent input +
Polymerisation input +
Reaction input +
Polymer repeatedUnit +

You can find documentation for the Reactome data model here.

Sidebar on the left shows the hierarchy of Reactome classes. The number of instances of this class is shown in square brackets and is hyperlinked to a page listing all instances in this class.

The main panel shows attributes of the selected class. Own attributes, i.e. the ones which are not inherited from a parent class are indicated in colour.

'+' in 'Cardinality' column indicates that this is a multi-value attribute.

'Value defines instance' column indicates the attributes the values of which determine instance identity and are used to check if an identical instance has been stored in the database already. 'ALL' indicates that that all of the values of a given attribute must be identical while 'ANY' shows that identity of any single value of a given attribute is enough. Of course, if the identity is defined by multiple attributes each of them has to match.